PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G193300.1.p
Common NameGLYMA_05G193300, LOC100780647
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 208aa    MW: 23725.3 Da    PI: 6.2463
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G193300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.65.7e-5635130297
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          +eqdrflPianv+rimkkv+P n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyveplk+yl+ky+
  Glyma.05G193300.1.p  35 KEQDRFLPIANVGRIMKKVIPPNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFEDYVEPLKTYLQKYK 124
                          89**************************************************************************************** PP

                NF-YB  92 elegek 97 
                          e+egek
  Glyma.05G193300.1.p 125 EIEGEK 130
                          ***996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.2E-5332154IPR009072Histone-fold
SuperFamilySSF471135.59E-4137146IPR009072Histone-fold
PfamPF008082.0E-2740104IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.7E-206886No hitNo description
PROSITE patternPS0068507187IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.7E-2087105No hitNo description
PRINTSPR006151.7E-20106124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MEDESHNNTL PNGFNTGSPE SPFLKTSTTT TQHNKEQDRF LPIANVGRIM KKVIPPNGKI  60
SKDAKETVQE CVSEFISFVT GEASDKCQRE KRKTINGDDV IWAITTLGFE DYVEPLKTYL  120
QKYKEIEGEK LSIPKQMRSE QRLQQHHNNY HDQNNQPFNG AYASSNLISQ PPYVPTDQKF  180
SLTFSPNSIQ SQLRQQDQID SVGHWYE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A8e-4535125393NF-YB
4awl_B7e-4535125494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A7e-4535125494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and green siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G193300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524310.11e-155nuclear transcription factor Y subunit B-7-like
RefseqXP_028233311.11e-155nuclear transcription factor Y subunit B-7-like
SwissprotQ9SIT92e-68NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLA0A0B2RPC71e-154A0A0B2RPC7_GLYSO; Nuclear transcription factor Y subunit B-7
TrEMBLI1K5111e-154I1K511_SOYBN; Uncharacterized protein
STRINGGLYMA05G32680.11e-154(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132492430
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.11e-66nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]