PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G208300.1.p
Common NameGLYMA_05G208300, LOC100795524
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 632aa    MW: 70807 Da    PI: 6.7855
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G208300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH474.4e-15431477455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h + ErrRR+++N++f +Lr+++P+ +      K +K++iL  A+eY+k+L+
  Glyma.05G208300.1.p 431 NHVMSERRRRAKLNQRFLTLRSMVPSiS------KDDKVSILDDAIEYLKKLE 477
                          799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.4E-546189IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.666427476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.21E-14430480No hitNo description
SuperFamilySSF474596.41E-18430489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-17431486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-12431477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-14433482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MVPENLKKQL ALAVRSIHWS YAIFWTDSTT QPGVLSWGEG YYNGDIKTRK TSQGVELNSD  60
QIGLQRSEQL RELFKSLKTV EVSPQTKRPS AALSPEDLTD AEWYYLVCMS FIFNIGQGLP  120
GRTLAKGQSI WLNNAHSADC KIFSRSLLAK SASIETVVCF PFREGVIELG TTEQVSEDLS  180
VIERIKTSFL NSLHVDVPNK SVATLKSRKQ EDLSYVAFDH NDYNVESIPE VGYEIANTTS  240
PNGSSNAIQA NQPLDDTLMV ESITNGTSQV QNWQVIDDEL SNCVHNSMNS SDCISPTFAS  300
LENIASAPKC NNPSDPCARD FQKCNNPKMT LVDPRSDEWH YQRVISTLIK NTDQLLMGMH  360
LQKFPQASSF VSWRKGEPMD SQWPRAGTSQ KLLKKVLFEV PQMHLDGLHE SQEENDYKEG  420
MRVEADENGM NHVMSERRRR AKLNQRFLTL RSMVPSISKD DKVSILDDAI EYLKKLERRI  480
NELEAHRGVT DIETGTRRSP QDTVERTPDH YFSKNNNNNG KKPGMKKRKA CGVDEKGREI  540
NLDALKGSYA NDVIVSTSDN GIVIEMKCPS RAGRMLEIME AINSFNIDFS SVQSTEADGN  600
LYLTIKSVLT GPRVATAKRI KLALQKVASK C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-1541897192Transcription factor MYC3
4rqw_B1e-1541897192Transcription factor MYC3
4rs9_A1e-1541897192Transcription factor MYC3
4yz6_A1e-1541897192Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.525070.0flower| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G208300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525395.10.0transcription factor EGL1-like
RefseqXP_028233561.10.0transcription factor EGL1-like
TrEMBLA0A445KS200.0A0A445KS20_GLYSO; Transcription factor GLABRA 3
TrEMBLI1K6H90.0I1K6H9_SOYBN; Uncharacterized protein
STRINGGLYMA05G37770.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Representative plantOGRP24471429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-173bHLH family protein