PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G221300.3.p
Common NameGLYMA_05G221300, LOC100803302
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 1091aa    MW: 119682 Da    PI: 6.2562
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G221300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.21.2e-21132233199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae++         +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ F   ++L +gD+v+F 
  Glyma.05G221300.3.p 132 FCKQLTASDTSTHGGFSVPRRAAEKIfppldysV-QPP-AQELVARDLHDNVWRFRHIYRGQPKRHLLTTGWSLFIGGKRLLAGDSVLFV 219
                          99*****************************843.333.359************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++++++l+++++r+
  Glyma.05G221300.3.p 220 --RDEKQQLLLGIRRA 233
                          ..5688889****997 PP
2Auxin_resp117.11.5e-38258341183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa+a++++s+F+v+YnPras+seFv++++k++ka++ +++s+GmRf+m+feteds +rr++Gt++gvsdld+vrW+nS Wr+L+
  Glyma.05G221300.3.p 258 AAQAVANNSPFTVFYNPRASPSEFVIPLAKYSKAVYsHHISPGMRFRMMFETEDSGTRRYMGTIIGVSDLDSVRWKNSLWRNLQ 341
                          789********************************9899*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.03E-42121260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-39123247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-17131223No hitNo description
SMARTSM010197.0E-21132234IPR003340B3 DNA binding domain
PfamPF023622.6E-19132233IPR003340B3 DNA binding domain
PROSITE profilePS5086311.533132234IPR003340B3 DNA binding domain
PfamPF065075.6E-34258341IPR010525Auxin response factor
PROSITE profilePS5174524.3469781062IPR000270PB1 domain
SuperFamilySSF542779.12E-69971056No hitNo description
PfamPF023092.4E-610211063IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1091 aa     Download sequence    Send to blast
MKAQPPDGAA AVAPNAGEGG EKKTINAELW QACAGPLLNL PSPGTHVVYF PQGHSEQVAA  60
SLKKDVDAQV PNYTNLPSKI PCLLHNVTLH ADPDTDEVYA QMTLQPVPSF DTDALLRSDI  120
FLRSSKPQPE FFCKQLTASD TSTHGGFSVP RRAAEKIFPP LDYSVQPPAQ ELVARDLHDN  180
VWRFRHIYRG QPKRHLLTTG WSLFIGGKRL LAGDSVLFVR DEKQQLLLGI RRANRQPSNL  240
SSSVLSSDSM HIGVLAAAAQ AVANNSPFTV FYNPRASPSE FVIPLAKYSK AVYSHHISPG  300
MRFRMMFETE DSGTRRYMGT IIGVSDLDSV RWKNSLWRNL QVGWDESTAE ERQSRVSVWE  360
IEPVTTPYFI CPPPFFRSKI PRLLGMPDDE PDFNNLFKST VPWLGDDMCV KGPQALPGLS  420
LVQWMNIQQN PALASSLQPN CGPSMSGLVL QNLPGADIAN PLGFSTSQIS QSNNVSVDAQ  480
NILQTSQQLD HIQKPPCPSS ALGAVTQPLQ QLGDITQQPR NLTNQTLPHD QAHTQLLNPQ  540
RVVQTNNIHQ QQQSSIQKQQ LLRSLSQNRA QKHQQTTLGL NERQIVFQSP MPDHFNQQLQ  600
MSDNQVRFQL LQKLQQQQQT LLAQQSALQQ PALIQIQDQQ RQLLDVANNS SSPIPGQVLE  660
NLPTLQNSLP EANSITHQIT MPSSQKNFHY SHLSQQPALL SEMSGHVGLP PTVTTNPLSA  720
SGGSILTGVG QSVITDDVPS CSTSPSTNNR ASVLPPVVSS QIHRSTTIGD DMAQSAVTIS  780
GASTLETMSS NANIVQPKYE VKASLNISKN QNQGNVAPQT YLNGVVQTDY LDSSSSTTSL  840
YHFRSDTHMH QNTNPFSYNP QLVYCRDNSQ NVEVQADARN NVLIGNNVNG QMGMPSNLDS  900
LLTKGTVGLG KELSNKFASG GLLRDLENNK GVPPEISSSM VSQTFEVPDM SFNSIDSTID  960
GSSFLNRGPW DLPPPPPPQQ QQVYKRGAVG RSIDITRYSG YEDLKQDLAL RFGIEGQLED  1020
LQRIGWKLVY VDHENDVLLV GDDPWEEFVN CVRCIKILSP QEVQQMSLDG DFGNGGLPYP  1080
AGSSSDGGNA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1651936245388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G221300.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353420.0AC235342.1 Glycine max strain Williams 82 clone GM_WBb0088H14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580494.10.0auxin response factor 19-like isoform X2
RefseqXP_028233752.10.0auxin response factor 19-like isoform X2
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A0R0K7D40.0A0A0R0K7D4_SOYBN; Auxin response factor
TrEMBLA0A445KSW00.0A0A445KSW0_GLYSO; Auxin response factor
STRINGGLYMA05G36430.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19