PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G224300.1.p
Common NameGLYMA_05G224300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 249aa    MW: 27646.8 Da    PI: 6.1612
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G224300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         rgrW++eEde l+++ k++ ++ +W t +++ g++R++k+c++rw++yl
  Glyma.05G224300.1.p 14 RGRWSPEEDETLKNYLKKHATPgNWITLPQKAGLKRCGKSCRLRWLNYL 62
                         8**********************************************97 PP
2Myb_DNA-binding43.47.7e-1469111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g +T eEd+ +  + +  G++ W++Ia+ ++ gRt++++k++w++
  Glyma.05G224300.1.p  69 GGFTHEEDQFICSLYATIGTR-WSLIAAQLP-GRTDNDVKNHWNT 111
                          569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.46962IPR017930Myb domain
SuperFamilySSF466892.85E-2611109IPR009057Homeodomain-like
SMARTSM007171.2E-101364IPR001005SANT/Myb domain
PfamPF002491.9E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-221569IPR009057Homeodomain-like
CDDcd001678.14E-81662No hitNo description
PROSITE profilePS5129420.08563117IPR017930Myb domain
SMARTSM007176.2E-1267115IPR001005SANT/Myb domain
PfamPF002491.4E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2270115IPR009057Homeodomain-like
CDDcd001675.31E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGRWSPE EDETLKNYLK KHATPGNWIT LPQKAGLKRC GKSCRLRWLN  60
YLRPHIKHGG FTHEEDQFIC SLYATIGTRW SLIAAQLPGR TDNDVKNHWN TKLKKMFLAA  120
NTNATGNTVF STPTSQPQVE DCSVFDDHEN SAEYHVLGLE QTPLPLGSDV SGLGSSCSVP  180
LSNEAVSASL VKEENENGTQ WFGEDESFLL DFVYEDNGFV SLENSSEVAP SFGSLYAPNT  240
TEKRKRDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-23141157106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G224300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441904.11e-124PREDICTED: myb-related protein 308-like
TrEMBLA0A445KT150.0A0A445KT15_GLYSO; Transcription factor MYB36
TrEMBLK7KRS80.0K7KRS8_SOYBN; Uncharacterized protein
STRINGGLYMA05G36120.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-68myb domain protein 36