PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G225100.6.p
Common NameGLYMA_05G225100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 377aa    MW: 42609.3 Da    PI: 7.7898
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G225100.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.21.1e-251411734128
                  NAM  34 ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgyWkatgkdkevlskkgelvglkktLvfy..kgr 112
                          i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+          + +W++tgk+++v++ +g+++g kk+Lv+y   g+
  Glyma.05G225100.6.p  14 IEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqnecdlqGGETRWHKTGKTRPVMV-NGKQKGYKKILVLYtnFGK 101
                          444437**********.555666799******************84555554433778************.999***********55479 PP

                  NAM 113 apkgektdWvmheyrl 128
                          ++k+ekt+Wvmh+y++
  Glyma.05G225100.6.p 102 NRKPEKTNWVMHQYHM 117
                          99999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.5021136IPR003441NAC domain
SuperFamilySSF1019414.32E-294136IPR003441NAC domain
PfamPF023656.8E-825117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MKSHPLIDEF IPTIEGEDGI CYTHPEKLPG VTRDGLSRHF FHRPSKAYTT GTRKRRKIQN  60
ECDLQGGETR WHKTGKTRPV MVNGKQKGYK KILVLYTNFG KNRKPEKTNW VMHQYHMGQH  120
EEEKEGELVV SKIFYQTQPR QCNWSDRSAT TGEGSGEQQP NNNNGRRDSG SGSCSSSKEI  180
VTHRDEMSAV VGVPPITTFN TSLDIQQLKS NHFGFIPFRK GFDEVGIGEA STAREVQASG  240
SCNEVHERHV AHHHQQQQQN QHAHQQIATT AFHISSPSLP ISTIISPPPF HHASIILDDN  300
SYHVSRIMLQ NENFQQQQQQ HHKLGGRSAS GLEELIMGCT STDIKAESSI TNPQEAEWLK  360
YSSYWPDPGN MQDHRE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G225100.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580485.10.0NAC domain-containing protein 75-like
RefseqXP_028233794.10.0NAC domain-containing protein 75-like
SwissprotQ9M0F81e-138NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A0R0K0100.0A0A0R0K010_SOYBN; Uncharacterized protein
TrEMBLA0A445KSP00.0A0A445KSP0_GLYSO; NAC domain-containing protein 75 isoform A
TrEMBLK7KRS30.0K7KRS3_SOYBN; Uncharacterized protein
STRINGGLYMA05G36031.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.16e-97NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]