PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G228100.2.p
Common NameGLYMA_05G228100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 224aa    MW: 24113.5 Da    PI: 4.4607
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G228100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.7e-182171155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         s y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Glyma.05G228100.2.p 21 SVYRGVRMRA-WGKWVSEIREPRK---KNRIWLGTFATAEMAARAHDVAALAIKG 71
                         78*****998.**********854...59**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-222180IPR016177DNA-binding domain
CDDcd000183.90E-322181No hitNo description
PfamPF008471.9E-122171IPR001471AP2/ERF domain
PROSITE profilePS5103223.0242279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-322280IPR001471AP2/ERF domain
SMARTSM003801.6E-362285IPR001471AP2/ERF domain
PRINTSPR003672.1E-102334IPR001471AP2/ERF domain
PRINTSPR003672.1E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MAELPSSEAS SSASTRKHSH SVYRGVRMRA WGKWVSEIRE PRKKNRIWLG TFATAEMAAR  60
AHDVAALAIK GNSAILNFPE LASSLPRPDS NSPRDVQAAA AKAAAMEVND APTTPTSSSS  120
ASLSQSSSWS SLAVSSSSGE DPSTPEELGE IVELPSLGTS FEIPDPSGEL VFFDPWPYSQ  180
AWSHGIYDES ESYFFGDQIS MQDSETESMV LCGFAFEASL WQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1920791272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.223070.0somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G228100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0920690.0BT092069.1 Soybean clone JCVI-FLGm-9B10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028233821.11e-112LOW QUALITY PROTEIN: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD38e-53DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A445KSC61e-159A0A445KSC6_GLYSO; Dehydration-responsive element-binding protein 3
TrEMBLK7KRQ71e-159K7KRQ7_SOYBN; Uncharacterized protein
STRINGGLYMA05G35741.11e-160(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.14e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]