PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G229900.1.p
Common NameGLYMA_05G229900, LOC100786353
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CPP
Protein Properties Length: 562aa    MW: 60369.8 Da    PI: 6.6405
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G229900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.53e-1491130242
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                          ++k+CnCk+skClk+YCeCfa+g +C+  C+C +C N+ e+
  Glyma.05G229900.1.p  91 KQKQCNCKHSKCLKLYCECFASGIYCDG-CNCVNCYNNVEN 130
                          89**************************.********9875 PP
2TCR512.9e-16175214140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Glyma.05G229900.1.p 175 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 214
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.0E-1690130IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.15291215IPR005172CRC domain
PfamPF036383.9E-1192127IPR005172CRC domain
SMARTSM011148.4E-20175216IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12178213IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MGEGEAEGSD GAPKNIVSND VVANALLPFD VPAKKLARQL DFTDFGGMPA PPQPPVILPL  60
PPSASVRVGK PESPKSRPRP GFEIKEATPK KQKQCNCKHS KCLKLYCECF ASGIYCDGCN  120
CVNCYNNVEN EAARREAVEA TLERNPNAFR PKIASSPHGT RDSREDAGEV LILGKHNKGC  180
HCKKSGCLKK YCECFQANIL CSENCKCMDC KNFEGSEERQ ALFHGDQNNN MVYIQQAANA  240
AITGAIGSSG YSSPPISKKR KGQELLFGPT VKDPSVGRQG QQANNVRVPA PSSSLSPIPG  300
ARVGPATLGP SKLMYRSLLA DIIQPQHLKE LCSVLVLVSG QAAKMFTDHK NFMDKHAEDQ  360
TETSRASSTQ EQLPSQKEAN VEKAMADDDC SSANQTDNIS PDNSCSDGAD VPKGRPMSPG  420
TLALMCDEQD TMFMTAASTV GSRAHACNTS LQPPYGQVMT EVYAEQERIV LTKFRDFLNR  480
VITMGEINET KCSSLARSEL ESQKDPNINC TGNASTETQH QQGATNNGVA KTAGNSSNST  540
SLFPGGSLVS ENGETYPKVE E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-32832242132Protein lin-54 homolog
5fd3_B1e-32832242132Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.268290.0cotyledon| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G229900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-168AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524396.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A0R0K5H40.0A0A0R0K5H4_SOYBN; Uncharacterized protein
STRINGGLYMA05G35561.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-165Tesmin/TSO1-like CXC domain-containing protein