PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G234500.1.p
Common NameGLYMA_05G234500, LOC100810945
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 247aa    MW: 28077.8 Da    PI: 5.239
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G234500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.4e-07137184455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR +iN+++  L+ ++P +     k +  a +L + ++Y++sLq
  Glyma.05G234500.1.p 137 SHSLAERVRRGKINEKLRCLQNIVPGC----YKTMGMAIMLDEIINYVQSLQ 184
                          8*************************8....355888999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.51E-9131188No hitNo description
SuperFamilySSF474597.33E-16131201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.589133183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-16133196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-5137184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-7139189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAEFTADLQS LRFPFLDIDN MEMQNLMMPF SCESFLGSPE AEFAGNLEEN FPDHNEVPVL  60
VPIINSVKNE IHEGQKRKAT DIWEPSSANS TPAVFESGSK TKNSCGRGKR VKRNMIEDKK  120
PNEVVHVRAK RGQATDSHSL AERVRRGKIN EKLRCLQNIV PGCYKTMGMA IMLDEIINYV  180
QSLQHQVEFL SMKLNAASTY YDFNSESDVL ETMQRARASE VKELDRYVRE ECEGVSCFEP  240
TWSWPL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.611890.0hypocotyl| meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G234500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1360591e-133BT136059.1 Lotus japonicus clone JCVI-FLLj-3K3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525253.10.0transcription factor BEE 1-like
RefseqXP_028231020.10.0transcription factor BEE 1-like
TrEMBLA0A445KT750.0A0A445KT75_GLYSO; Transcription factor BEE 1
TrEMBLI1K5R20.0I1K5R2_SOYBN; Uncharacterized protein
STRINGGLYMA05G35060.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.11e-59BR enhanced expression 1