PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G248200.1.p
Common NameGLYMA_05G248200, LOC100815758
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 153aa    MW: 16767.6 Da    PI: 9.0474
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G248200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer83.32.8e-261160357
          ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                         + +Y+eCl+NhAaslG++a+DGCgE++ + g    a +l+CaACgCHRnFHR+ +
  Glyma.05G248200.1.p 11 SSVYRECLRNHAASLGSYATDGCGEYTVD-G----AGGLQCAACGCHRNFHRKVK 60
                         568*************************8.3....569**************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.6E-221359IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-201458IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.0941459IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-101458IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.97E-1570136IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-2771138IPR009057Homeodomain-like
TIGRFAMsTIGR015651.2E-2878136IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MEGGSGGERN SSVYRECLRN HAASLGSYAT DGCGEYTVDG AGGLQCAACG CHRNFHRKVK  60
YLAAAESPPT EYGGSNSKKR FRSKFTEDQK EKMLGFAEKL GWKLQRRDLD DEIERFCRSV  120
GVSRQVFKVW MHNHKNSSSS SSTAANVSSL TQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-23771411679ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.560661e-137cotyledon
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G248200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525176.11e-111zinc-finger homeodomain protein 8-like
RefseqXP_028234099.11e-111zinc-finger homeodomain protein 8-like
SwissprotA2XLF41e-41ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV51e-41ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A0B2PM621e-109A0A0B2PM62_GLYSO; ZF-HD homeobox protein
TrEMBLI1K5891e-109I1K589_SOYBN; Uncharacterized protein
STRINGGLYMA05G33600.11e-110(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79822844
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-29homeobox protein 22