PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G003800.2.p
Common NameGLYMA_06G003800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 229aa    MW: 25823.4 Da    PI: 9.0219
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G003800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd +l+ +++ +G g+W++ ++  g+ R++k+c++rw +yl
  Glyma.06G003800.2.p 14 KGAWTKEEDHRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                         79******************************99************97 PP
2Myb_DNA-binding31.25.2e-1067104147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg+++ eEd+l+++++ +lG++        ++ gRt++++k++w+++
  Glyma.06G003800.2.p  67 RGNFSLEEDQLIIKLHSLLGNK--------LP-GRTDNEIKNYWNTH 104
                          89******************99........**.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-23564IPR009057Homeodomain-like
PROSITE profilePS5129422.387965IPR017930Myb domain
SuperFamilySSF466892.66E-2313101IPR009057Homeodomain-like
SMARTSM007178.1E-121363IPR001005SANT/Myb domain
PfamPF002493.0E-151461IPR001005SANT/Myb domain
CDDcd001671.56E-91661No hitNo description
Gene3DG3DSA:1.10.10.601.8E-1765109IPR009057Homeodomain-like
PROSITE profilePS5129415.48666109IPR017930Myb domain
SMARTSM007171.3E-766107IPR001005SANT/Myb domain
PfamPF002493.6E-867104IPR001005SANT/Myb domain
CDDcd001672.23E-769105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDHRLISYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF SLEEDQLIIK LHSLLGNKLP GRTDNEIKNY WNTHIRRKLL SRGIDPATHR  120
PLNDSSHQEP AAVSAPPKHQ ESFHHERCPD LNLELTISPP HHPQPDHPHL KTLVTNSNLC  180
FPCSLGLHNS KDCSCALHTS TANATATGYD FLALKTTVVL DYRTLHMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-241310926128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.360260.0flower| leaf| stem| vegetative bud
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G003800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5550571e-142FJ555057.1 Glycine max transcription factor MYB047 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235637.11e-155MYB transcription factor MYB48
RefseqXP_028234492.11e-155myb-related protein 308-like
SwissprotP813934e-99MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A0R0JF181e-168A0A0R0JF18_SOYBN; Uncharacterized protein
STRINGGLYMA06G00630.11e-154(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-93myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]