PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G009200.1.p
Common NameGLYMA_06G009200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SRS
Protein Properties Length: 201aa    MW: 22323.7 Da    PI: 8.4033
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G009200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70290.44e-282177359
               DUF702  3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaa 59
                         sg+++CqdCGnqakk+C++ RCRtCCk++gf+C+th+kstW p+++rr + q +   
  Glyma.06G009200.1.p 21 SGGSKCQDCGNQAKKECSYLRCRTCCKNKGFHCQTHIKSTWTPVDHRRRHFQGQGGD 77
                         6889*****************************************999986655544 PP
2DUF70271.62.4e-2294146102154
               DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                            ++P+  +s+a frc++v+s+dd+ +e+aYqt+v+igGhvf+G+LydqG+e 
  Glyma.06G009200.1.p  94 ELRFPAATNSMATFRCIHVRSMDDAVNEIAYQTSVNIGGHVFSGLLYDQGPEY 146
                          345***********************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.0E-232373IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.8E-242566IPR006510Zinc finger, lateral root primordium type 1
PfamPF051421.1E-1891145IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016247.6E-2096144IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MSLGVKDQMQ RVRQGEEEVA SGGSKCQDCG NQAKKECSYL RCRTCCKNKG FHCQTHIKST  60
WTPVDHRRRH FQGQGGDHHI PQNQNQINPY SGLELRFPAA TNSMATFRCI HVRSMDDAVN  120
EIAYQTSVNI GGHVFSGLLY DQGPEYQRGH QGESSTGFVD KQQNNNNNNL DSSGASATHQ  180
EYPFPLSSFR PGYIKPKVSG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G009200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150357e-46AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006582461.11e-144protein SHI RELATED SEQUENCE 3
TrEMBLA0A0R0JAB51e-149A0A0R0JAB5_SOYBN; Uncharacterized protein
STRINGGLYMA06G01160.21e-111(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99692541
Representative plantOGRP13131549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21400.13e-44SHI-related sequence3