PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G027000.1.p

Common Name

GLYMA_06G027000, LOC100794842

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

DBB

Protein Properties

Length: 246aa MW: 27171.6 Da PI: 6.5814

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G027000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.5	1.1e-07	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +++++++lfC+ ++ lC+ C H+ H+ Glyma.06G027000.1.p 4 QCDVCNKQQASLFCTADEAALCDGCDHRVHHAnklaskHQ 43 7***************************964446666676 PP
2	zf-B_box	22.5	2.3e-07	56	95	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ ++e ++ fC++++ lC++C + H+ H Glyma.06G027000.1.p 56 PLCDVCQERRAFVFCQQDRAILCKECDVPVHSAndltknH 95 57**************************999555555556 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.964	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.84E-6	3	47	No hit	No description
Pfam	PF00643	8.4E-6	4	43	IPR000315	B-box-type zinc finger
SMART	SM00336	3.9E-7	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.627	53	100	IPR000315	B-box-type zinc finger
SMART	SM00336	1.4E-14	53	100	IPR000315	B-box-type zinc finger
CDD	cd00021	1.13E-9	56	100	No hit	No description
Pfam	PF00643	4.8E-6	56	96	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MKIQCDVCNK QQASLFCTAD EAALCDGCDH RVHHANKLAS KHQRFSLSHP SAKHFPLCDV 60 CQERRAFVFC QQDRAILCKE CDVPVHSAND LTKNHNRFLL TGIKFSALDS PSTPPKPAGG 120 NSLTNQQPQQ QTGFTGSSIS EYLINTIPGM EFEDFLDSHS LPFACSKNSD DMMLSMFGEG 180 NMVSFSAGGI WVPQAPSSVQ MDQQSGYKDT WETSIRSSFG DDSLLVPQMT PPSNVFNNKR 240 SRLLW*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.44981	1e-148	flower\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269\|PubMed:17965270, ECO:0000269\|PubMed:21070414}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G027000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003527799.1	0.0	B-box zinc finger protein 21
Refseq	XP_028234730.1	0.0	B-box zinc finger protein 21-like
Swissprot	Q9LQZ7	1e-60	BBX21_ARATH; B-box zinc finger protein 21
TrEMBL	A0A0R4J3G1	0.0	A0A0R4J3G1_SOYBN; Uncharacterized protein
TrEMBL	A0A445K3X7	0.0	A0A445K3X7_GLYSO; B-box zinc finger protein 21
STRING	GLYMA06G02970.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1448	34	94
Representative plant	OGRP2984	11	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	6e-63	salt tolerance homolog2

Link Out ? help Back to Top
Phytozome	Glyma.06G027000.1.p
Entrez Gene	100794842

Publications ? help Back to Top
Xu D, et al. BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60 [PMID:27325768] Xu DB, et al. The G-Protein β Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 in Arabidopsis. Mol Plant, 2017. 10(9): p. 1206-1223 [PMID:28827171] Xu D,Jiang Y,Li J,Holm M,Deng XW The B-Box Domain Protein BBX21 Promotes Photomorphogenesis. Plant Physiol., 2018. 176(3): p. 2365-2375 [PMID:29259103] Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains. Plant Physiol., 2018. 176(4): p. 2963-2976 [PMID:29439209] Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum. Plant Physiol., 2018. 177(1): p. 369-380 [PMID:29555784] Kang X, et al. HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture. Plant Cell Environ., 2018. 41(8): p. 1912-1925 [PMID:29748960]