PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G031400.1.p
Common NameGLYMA_06G031400, LOC100786029
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 86aa    MW: 10175.4 Da    PI: 6.9728
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G031400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.3e-10345444
                         S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         WT eE  ++ da + +G++   +W  +a+ +g g++  ++k ++
  Glyma.06G031400.1.p  3 WTREENRRFEDALAVHGPDdpnRWQHVANAVG-GKSVQEVKMHY 45
                         *****************99*************.********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.143153IPR017884SANT domain
SMARTSM007174.4E-5351IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-5346IPR009057Homeodomain-like
CDDcd001673.86E-7345No hitNo description
SuperFamilySSF466891.42E-12356IPR009057Homeodomain-like
PfamPF002492.5E-8345IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MGWTREENRR FEDALAVHGP DDPNRWQHVA NAVGGKSVQE VKMHYEILQE DVIRIERDQI  60
PLPSYRGNER QIHNEQRRMR DLSLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-223851193RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G031400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0984111e-142BT098411.1 Soybean clone JCVI-FLGm-12O6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528087.13e-57protein RADIALIS-like 6
RefseqXP_028234794.13e-57protein RADIALIS-like 6
SwissprotQ1A1732e-24RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A445K4757e-56A0A445K475_GLYSO; Protein RADIALIS-like 6
TrEMBLC6TL357e-56C6TL35_SOYBN; Uncharacterized protein
STRINGGLYMA06G03460.11e-56(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF153651012
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.27e-27RAD-like 6