PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G036800.1.p
Common NameGLYMA_06G036800, Glyma06g04010.1, MYB124
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 222aa    MW: 24513 Da    PI: 7.5852
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G036800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-173176147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W++eEd +l  +v+++G+++W++I+r++  gR++k+c++rw + 
  Glyma.06G036800.1.p 31 KGPWSAEEDRILTGLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 76
                         79*****************************9.***********985 PP
2Myb_DNA-binding56.75.7e-1885127347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +++++Ed+ ++ a++q+G++ W+tIar ++ gRt++ +k++w++ 
  Glyma.06G036800.1.p  85 PFSAQEDDTIIAAHAQYGNR-WATIARLLP-GRTDNAVKNHWNST 127
                          79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.2192681IPR017930Myb domain
SuperFamilySSF466891.47E-3128124IPR009057Homeodomain-like
SMARTSM007176.1E-153079IPR001005SANT/Myb domain
PfamPF002491.1E-163176IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-243284IPR009057Homeodomain-like
CDDcd001672.71E-143375No hitNo description
SMARTSM007171.3E-1582130IPR001005SANT/Myb domain
PROSITE profilePS5129420.76683132IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2285131IPR009057Homeodomain-like
CDDcd001672.10E-1285128No hitNo description
PfamPF002499.0E-1585127IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEATNRSSSS TSSSSDCCSS ESNPNKPDRI KGPWSAEEDR ILTGLVERYG PRNWSLISRY  60
IKGRSGKSCR LRWCNQLSPA VEHRPFSAQE DDTIIAAHAQ YGNRWATIAR LLPGRTDNAV  120
KNHWNSTLKR RAKGININVN HANNEVAASS SAPSRHFDFE DDPLTALTLA PPGIANGTVA  180
EDAVPDHRAS PEGFWDMMRD VIAREVREYV SSNFSDNSGF H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-42271323108B-MYB
1h88_C3e-412713254159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-412713254159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.148450.0meristem| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G036800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311920.0KT031192.1 Glycine max clone HN_CCL_38 MYB/HD-like transcription factor (Glyma06g04010.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235925.11e-164MYB transcription factor MYB124
RefseqXP_028234861.11e-164transcription factor MYB44-like
TrEMBLA0A445K4771e-162A0A445K477_GLYSO; Transcription factor MYB77
TrEMBLQ0PJI91e-162Q0PJI9_SOYBN; MYB transcription factor MYB124
STRINGGLYMA06G04010.11e-163(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50743256
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.17e-59myb domain protein 77
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]