PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G040800.1.p

Common Name

GLYMA_06G040800, LOC100788158

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 259aa MW: 29397.3 Da PI: 7.1796

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G040800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26	1.6e-08	162	202	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L Glyma.06G040800.1.p 162 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 202 699***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.434	153	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.5E-14	154	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-14	157	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-13	159	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.6E-6	163	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.20E-6	176	207	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MEQQHMDMMT MMMLQHLPEF SEPYTHTMEG FHPPSEEFCG NNNNNIRNTM QLADLIDNNN 60 PLSPIPWSSS YSFTHLPAST TEISFSNNSH PTTPIMLQEH EQQYEGANAN PYGGEKRNSM 120 AAMREMIFRM AAMQPIHIDP ESVKAPKRRN VKISKDPQSV AARHRRERIS ERIRILQRLV 180 PGGTKMDTAS MLDEAIHYVK FLKTQVQSLE RASSANNNIR PLNAAGQIGF PVASTPYFPL 240 PSKPYQAPNM DNMHDTYH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.10615	1e-179	cotyledon\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G040800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ336955	0.0	DQ336955.1 Glycine max cultivar Williams 82 clone BAC gmw1-52d3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003527719.1	0.0	transcription factor HEC2
Refseq	XP_028234244.1	0.0	transcription factor HEC2-like
TrEMBL	A0A445K4H7	0.0	A0A445K4H7_GLYSO; Transcription factor HEC2
TrEMBL	Q00M67	0.0	Q00M67_SOYBN; Bhelix-loop-helix transcription factor
STRING	GLYMA06G04380.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF651	34	141
Representative plant	OGRP761	15	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50330.1	2e-41	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.06G040800.1.p
Entrez Gene	100788158

Publications ? help Back to Top
Schlueter JA,Scheffler BE,Schlueter SD,Shoemaker RC Sequence conservation of homeologous bacterial artificial chromosomes and transcription of homeologous genes in soybean (Glycine max L. Merr.). Genetics, 2006. 174(2): p. 1017-28 [PMID:16888343]