PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G041800.1.p
Common NameGLYMA_06G041800, LOC100781015
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 231aa    MW: 26599.1 Da    PI: 9.2462
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G041800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.91.1e-2090149357
                          --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          +R+++t+eq+ +Le l++   r+p+a+++e+++ +l    +++ ++V++WFqN++a+e++
  Glyma.06G041800.1.p  90 TRWNPTQEQIGILEMLYKGgIRTPNAQQIEQITVQLgkygKIEGKNVFYWFQNHKARERQ 149
                          7*****************99**************************************97 PP
2Wus_type_Homeobox115.82e-3790151465
    Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          tRW+Pt+eQi iLe+lyk G+rtPn+++i++it +L +yGkie+kNVfyWFQN+kaRerqkq
  Glyma.06G041800.1.p  90 TRWNPTQEQIGILEMLYKGGIRTPNAQQIEQITVQLGKYGKIEGKNVFYWFQNHKARERQKQ 151
                          8***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.89685150IPR001356Homeobox domain
SuperFamilySSF466891.67E-1286157IPR009057Homeodomain-like
SMARTSM003893.5E-687154IPR001356Homeobox domain
CDDcd000865.18E-590151No hitNo description
PfamPF000462.3E-1890149IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-791149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGSMKVHQFT RGFCWEHEPF LTLGCKRLRP LAPKLPNTQT NTIPTTPSVP FDLKSFIRPE  60
SGPRKPVSSD DSKKDPPSPQ GQVETHPGGT RWNPTQEQIG ILEMLYKGGI RTPNAQQIEQ  120
ITVQLGKYGK IEGKNVFYWF QNHKARERQK QKRNSLAFSH SPRTHTIHSI VTLETTRGEV  180
VERDHEEDSP YKKKCRRWVF ECLEEQNMSS ACEQEEHRTL ELFPLHPEGR *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.568680.0hypocotyl| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G041800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0965280.0BT096528.1 Soybean clone JCVI-FLGm-15J7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241420.11e-172uncharacterized protein LOC100781015
RefseqXP_028234920.11e-172WUSCHEL-related homeobox 4-like
SwissprotQ6X7J93e-73WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A445K4N61e-171A0A445K4N6_GLYSO; WUSCHEL-related homeobox 4
TrEMBLC6TFY41e-171C6TFY4_SOYBN; Uncharacterized protein
STRINGGLYMA06G04470.11e-172(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61323452
Representative plantOGRP71671117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.14e-71WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]