PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G051600.9.p
Common NameGLYMA_06G051600, LOC100806862
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 540aa    MW: 59918 Da    PI: 5.9689
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G051600.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.11.5e-084564941854
                          HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  Glyma.06G051600.9.p 456 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 494
                          5887779******************************88 PP
2BELL74.31.9e-24328397171
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                          +r++ ++kk++Ll+ll+ Vd+rY+q+ ++++tv+s+F+a+++l++ ++++++Al++iS  +r L+++i++ 
  Glyma.06G051600.9.p 328 QRHAAESKKSQLLTLLQLVDNRYSQCLDEIHTVVSAFQAATELDP-QIHAHFALQTISILYRDLRERISNY 397
                          68999****************************************.**********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.6E-21252396IPR006563POX domain
PfamPF075261.5E-26258395IPR006563POX domain
PROSITE profilePS5007111.078435498IPR001356Homeobox domain
SMARTSM003896.9E-6438502IPR001356Homeobox domain
CDDcd000866.07E-11438499No hitNo description
SuperFamilySSF466892.22E-15440507IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-26441504IPR009057Homeodomain-like
PfamPF059208.5E-15455494IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MESDMYTAAL DISGREATVI DEISQHSASN PLIQCYSLDL NNQSHIISGI SMLSGEQVGD  60
ASNPMENTEL QEHLAGGMPI TPSSLAAILA ARTGLEENLG NSSSALPPSL CSMGALGAFF  120
NNLQGTSNSN PLSATFEDCG YNEVSSKWNA NKFPKAPEID GTCQPYPFIA NLDQNEWPSS  180
NVANMANHAY HSSHFSKELS LSLATSTTAG MCSEVSCSNV TPCMNGTMSG LEQASCSSSR  240
ELSMNLGGNK YVEFSPEVLE SRYLVGIQEI LAQIGRYSFE NLEQLNYSAG NHRSGGNKSS  300
SAFPPKRRIL IDHNANSTYE AHAESPLQRH AAESKKSQLL TLLQLVDNRY SQCLDEIHTV  360
VSAFQAATEL DPQIHAHFAL QTISILYRDL RERISNYILA MGSNFNNSCS EENEWSVETS  420
FLQKQWALQQ LKRKDQLWRP QRGLPERSVS VLRAWMFQNF LHPYPKDAEK HLLAVKSGLT  480
RSQVSNWFIN ARVRLWKPMI EEMYAEMNKR KACRNEEGMQ SNHGTRISTT NERFNQCQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14444502563Homeobox protein Meis2
3k2a_B1e-14444502563Homeobox protein Meis2
4xrs_A1e-14444501158Homeobox protein Meis1
4xrs_B1e-14444501158Homeobox protein Meis1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Down-regulated in the shoot apical meristem (SAM) upon floral induction. {ECO:0000269|PubMed:17908157}.
UniprotTISSUE SPECIFICITY: Most abundant in flowers.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G051600.9.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0945590.0BT094559.1 Soybean clone JCVI-FLGm-18H4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581290.10.0homeobox protein ATH1 isoform X4
SwissprotP487311e-102ATH1_ARATH; Homeobox protein ATH1
TrEMBLK7KT740.0K7KT74_SOYBN; Uncharacterized protein
STRINGGLYMA06G05430.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.16e-96homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]