PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G051900.1.p
Common NameGLYMA_06G051900, LOC100806176
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 242aa    MW: 26417.7 Da    PI: 10.0239
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G051900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.47.6e-14126170347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ +++ + ++lG+g+W+ I++ + ++Rt+ q+ s+ qky
  Glyma.06G051900.1.p 126 PWTEEEHRIFLIGLEKLGKGNWRGISKSFVTTRTPTQVASHAQKY 170
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.6141734IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.573119175IPR017930Myb domain
SuperFamilySSF466891.15E-17121175IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-17122174IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.4E-11123169IPR009057Homeodomain-like
SMARTSM007178.0E-10123173IPR001005SANT/Myb domain
PfamPF002491.0E-11126170IPR001005SANT/Myb domain
CDDcd001672.34E-9126171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006338Biological Processchromatin remodeling
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0035066Biological Processpositive regulation of histone acetylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0004402Molecular Functionhistone acetyltransferase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MRGIFLICLV ENMGIARKCS YCGNLGHNAR TCKSTPGQGQ LKLFGVQLDV SSSSSSSNSF  60
SSSSPSYSGM KRSFSTNYLL SSWASSSVPS SFSSPSLLGA NENSDSYLLN ANSLISTIQD  120
TKKGVPWTEE EHRIFLIGLE KLGKGNWRGI SKSFVTTRTP TQVASHAQKY FLRQSQNSFN  180
KRKHRPSPNL FDNWLSHRPH SLLNWVTTLT STNNCTVQSA SPDLELKLAT PTPLELSVAD  240
A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G051900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014632752.11e-177probable transcription factor At5g61620
RefseqXP_028235043.11e-177probable transcription factor At5g61620 isoform X1
TrEMBLA0A445K5021e-175A0A445K502_GLYSO; Putative transcription factor isoform A
TrEMBLK7KT791e-175K7KT79_SOYBN; Uncharacterized protein
STRINGGLYMA06G05450.21e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151421013
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.15e-39MYB_related family protein