PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G054900.1.p

Common Name

GLYMA_06G054900

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 105aa MW: 11911.1 Da PI: 10.0261

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G054900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	41.8	2.1e-13	1	46	5	50
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++l+dls F+ ++k+A L++++Tv+K iCR+y + WP+R+++ Glyma.06G054900.1.p 1 MTLNDLSGVFHITMKAAKDVLEMSVTVIKAICRKYRLYKWPQRQLQ 46 6899****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.787	1	68	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-13	1	46	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MTLNDLSGVF HITMKAAKDV LEMSVTVIKA ICRKYRLYKW PQRQLQPLAR RLKVLKRALE 60 SSQDPVIIQT TNMEVRRIKQ EMTQLCGGVT PTGIEIPEVE ENSV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G054900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028234287.1	2e-68	uncharacterized protein LOC114414152
TrEMBL	A0A0R0JIS0	1e-70	A0A0R0JIS0_SOYBN; Uncharacterized protein
STRING	GLYMA06G05761.1	6e-67	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46
Representative plant	OGRP10333	4	8

Link Out ? help Back to Top
Phytozome	Glyma.06G054900.1.p