PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G063700.1.p
Common NameGLYMA_06G063700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 294aa    MW: 32268.2 Da    PI: 8.8046
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G063700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024108130123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C + F ++  L  H++ H
  Glyma.06G063700.1.p 108 FSCNYCQRKFYSSQALGGHQNAH 130
                          89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.68E-6105136No hitNo description
PROSITE profilePS5015711.406108135IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MNLPITRARG EYSAMETLSH ESPFYDNNLS AEKTPPSPST PLQNPQEKKQ LSVKEQEEAK  60
TDTLLDLNAS GDDSAVGCSP VLNLITCLDT DLPSTSSENQ HGSEPRVFSC NYCQRKFYSS  120
QALGGHQNAH RRERSITKRG HHRSGSRGMM ASATTAFGIP FLHNHLHHYA TMASLPLHGG  180
CSNNKPLGIK AHSIIHKPSS NSSHISFNGF GTTFGHHGWS RPLIDQQPRI GKLTMESCHK  240
TSRGNVGKFD AVKTTMINSA TIEEISGYNM ISGVTRFKTN QEEMKHLDLS LKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G063700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527778.30.0zinc finger protein 1
TrEMBLA0A0R0JJ420.0A0A0R0JJ42_SOYBN; Uncharacterized protein
STRINGGLYMA06G06750.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.12e-40zinc-finger protein 1