PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G079800.2.p
Common NamebZIP62, GLYMA_06G079800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 253aa    MW: 27727.7 Da    PI: 6.8696
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G079800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.91e-1385136354
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                          + kr rrk +NR +ArrsR+RK+a++  Le  v++L+ eN +L k+    ++
  Glyma.06G079800.2.p  85 DMKRLRRKVSNRDSARRSRRRKQAQLSDLELQVEKLKVENATLYKQFTDASQ 136
                          68*****************************************987665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.3E-1283147IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.88785148IPR004827Basic-leucine zipper domain
PfamPF001701.4E-1186131IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.1E-1087125No hitNo description
SuperFamilySSF579595.34E-1087136No hitNo description
PROSITE patternPS00036090105IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.101.6E-4126158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MTSFSACGLI DPLCSQNLTP KHSTITATID SQSSICATSN VGSPVSANKP EGRENHTKGA  60
TSGSSEPSDE DDEAGACEQS TNPADMKRLR RKVSNRDSAR RSRRRKQAQL SDLELQVEKL  120
KVENATLYKQ FTDASQHFRE ADTNNRVLKS DVEALRAKVK LAEDMVTRSS FTTLNNQLLQ  180
TQHHQMSTPQ QLNTTNLRRM AHVSPTITVH GNDVSYNNGG QNSALGNLDM SFNDINEVMN  240
DAMSCGTIWP LD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
189105RRKVSNRDSARRSRRRK
299106RRSRRRKQ
3101106SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.383570.0epicotyl| hypocotyl| root| seed coat| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in silique vasculature and funiculi. In the anthers, restricted to the connective tissue at pre- and post-dehiscence stages and detected in the vascular tissue of the stamen filament. {ECO:0000269|PubMed:18841482}.
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, stems, young leaves, and flowers, mostly in vascular tissues (e.g. phloem). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. negative regulator of abscisic acid signaling and functions in salt and freezing tolerance
    [PMID: 18365246]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G079800.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0966690.0BT096669.1 Soybean clone JCVI-FLGm-21C7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237027.10.0bZIP transcription factor bZIP62
RefseqXP_028235421.10.0basic leucine zipper 9-like
SwissprotQ9FUD38e-58BZIP9_ARATH; Basic leucine zipper 9
TrEMBLA0A0B2QAD10.0A0A0B2QAD1_GLYSO; Basic leucine zipper 9 isoform A
TrEMBLA0A445K6E40.0A0A445K6E4_GLYSO; Basic leucine zipper 9 isoform B
TrEMBLI1K9720.0I1K972_SOYBN; Uncharacterized protein
TrEMBLQ0GPH50.0Q0GPH5_SOYBN; BZIP transcription factor bZIP62
STRINGGLYMA06G08390.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.12e-42basic leucine zipper 9
Publications ? help Back to Top
  1. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]