PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G097100.2.p
Common NameGLYMA_06G097100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 456aa    MW: 49009.3 Da    PI: 9.6532
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G097100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-095095144
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44
                         r++W++eEd +l  av+++G g+W+t a+      +R++ q+  rw
  Glyma.06G097100.2.p 50 RKAWSEEEDMQLRAAVQRWGEGNWATMAKGDDfpIKRSATQLAQRW 95
                         789************************9865555559999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.94345103IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-1147100IPR009057Homeodomain-like
SuperFamilySSF466891.15E-1048101IPR009057Homeodomain-like
SMARTSM007173.3E-949101IPR001005SANT/Myb domain
PfamPF002492.1E-85095IPR001005SANT/Myb domain
CDDcd116601.26E-1151100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MCIRGCCMCE GTSFIFPVTV QRQTLPTISS TDGIETKGIV GGNMASKRKR KAWSEEEDMQ  60
LRAAVQRWGE GNWATMAKGD DFPIKRSATQ LAQRWSILRK KDGCTNTGTV TSTQYTTAEQ  120
LATRHSLSLA LDMPFKKLTA PGMTDVKPST SVKNQVQIRN TTEKVASSFV PPQQALLGSS  180
DLHAKSKLAD EKPVLKGNLI SDPVVKSATA TLGTRIDPLS NTISQIKVAQ VKNAIDTKPA  240
VSSLTKPSIS TNLPSDPKNK HVTPLADKGA QVKNAVDTTE PAVSSLTKPS ISTNLPSDPK  300
NKHATPLADK VPLKQDVNPT KELQVSNPST TPKEKLQENE PPKVTTGSQV DSNPEKGRLE  360
KGQETSIPLV KISGGEEVSK DKANQGVVCE EQGSVKKATE KNNIDKGSQS LEQDKKINSI  420
NQSSNDQNGN DKHVNLPVQD ELSQSAKVVK NDGEC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.50950.0pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G097100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150355e-58AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527883.10.0uncharacterized protein LOC100799956
TrEMBLA0A0R0JEQ60.0A0A0R0JEQ6_SOYBN; Uncharacterized protein
STRINGGLYMA06G10170.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.14e-25MYB_related family protein