PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G114000.1.p

Common Name

GLYMA_06G114000, Glyma06g11970.1

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 300aa MW: 34049.6 Da PI: 6.6738

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G114000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.9	7e-52	7	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelv +yL++k++++++ + +i+e+d+yk++PwdLp ++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk Glyma.06G114000.1.p 7 LPPGFRFHPTDEELVLHYLCRKCASQPIAV-PIIAEIDLYKYDPWDLPGLATYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADK 95 79************************99.88***********7667789******************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + + vg+kk Lvfy g+apkg k++W+mheyrl Glyma.06G114000.1.p 96 PIGQ--PKPVGIKKALVFYAGKAPKGDKSNWIMHEYRL 131 98..789***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-62	3	157	IPR003441	NAC domain
PROSITE profile	PS51005	60.575	7	157	IPR003441	NAC domain
Pfam	PF02365	3.7E-27	8	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MASELELPPG FRFHPTDEEL VLHYLCRKCA SQPIAVPIIA EIDLYKYDPW DLPGLATYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGTGYWKA TGADKPIGQP KPVGIKKALV FYAGKAPKGD 120 KSNWIMHEYR LADVDRSVRK KNTLRLDDWV LCRIYNKKGT IEKLQPSSDV AHSRNIESSE 180 IEDRKPEILK SGGGCLPPPV PVPAPPQATA KTDYMYFDPS DSIPKLHTDS SCSEQVVSPE 240 FASEVQSEPK WNEWEKSLEF PFNYVDATLN NSFMAQFQGN NQMLSPLQDM FMYWPNKSF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-79	3	163	11	174	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.1750	0.0	flower\| hypocotyl\| leaf\| pod\| root\| seed coat\| vegetative bud

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G114000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031211	0.0	KT031211.1 Glycine max clone HN_CCL_60 NAC transcription factor (Glyma06g11970.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001236871.2	0.0	NAC domain protein NAC2
Refseq	XP_028235892.1	0.0	NAC domain-containing protein 2-like
Swissprot	Q39013	1e-146	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	A0A445K836	0.0	A0A445K836_GLYSO; NAC domain-containing protein 2
TrEMBL	I1KAA6	0.0	I1KAA6_SOYBN; NAC transcription factor
STRING	GLYMA06G11970.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1258	34	108
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-145	NAC family protein

Link Out ? help Back to Top
Phytozome	Glyma.06G114000.1.p

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]