PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G129900.1.p

Common Name

GLYMA_06G129900, LOC102667394

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 255aa MW: 29106.6 Da PI: 6.6202

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G129900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.6	3.4e-25	147	194	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++e++skyF pi++AAk+++v++T+LK++CR+++I+RWP+Rkiksl Glyma.06G129900.1.p 147 LEFEEISKYFGVPINEAAKQMNVGVTMLKKRCRELNIMRWPRRKIKSL 194 89********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.984	130	215	IPR003035	RWP-RK domain
Pfam	PF02042	3.9E-22	147	194	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MDFVFVSDND FPNLDIIPHT LNNSCFCSPH LNDTHKIMEI SPLKGYFSHL DWTPQSPYPS 60 NELPDLESWN LDFILPPLDE DLEELDQKQL KSVVPQGFHC NQEKGFGDAL LATENVSATC 120 VKKEKVQIID QSPLASSSST KKRPCALEFE EISKYFGVPI NEAAKQMNVG VTMLKKRCRE 180 LNIMRWPRRK IKSLQMVIDS VKEMGLEDEV ARLEEHKKLL EKLPGLELSE EAKKLRHACF 240 KANYKKKRCM ALQA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G129900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006581652.1	0.0	protein RKD4
Refseq	XP_028236125.1	0.0	protein RKD4-like
TrEMBL	A0A445K8Z3	0.0	A0A445K8Z3_GLYSO; Protein RKD4
TrEMBL	K7KUT3	0.0	K7KUT3_SOYBN; Uncharacterized protein
STRING	GLYMA06G13530.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6898	32	47
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	5e-28	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Glyma.06G129900.1.p
Entrez Gene	102667394