PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G131500.1.p

Common Name

GLYMA_06G131500

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 207aa MW: 22960.2 Da PI: 10.0003

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G131500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.7	7.2e-40	38	97	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s Glyma.06G131500.1.p 38 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRS 97 7899******************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-30	34	96	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-34	39	96	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.264	42	96	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MDTAQWAQGI GVVKQPTMEG GSKPPPPPML ERRARPQKDQ ALNCPRCNST NTKFCYYNNY 60 SLSQPRYFCK TCRRYWTEGG SLRNVPVGGG SRKNKRSTPS APPPSSASAQ AKKLPDLTTP 120 NFPQSASQDP KIHQGQDLNL AYPPAEDYNT VSMSKLIEVP YNTELTRVAF IKTLLPHQHQ 180 HLHLLTISCL PWSFSRLGLL LLPQGV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.28679	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269\|PubMed:20563990}.
Uniprot	TISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269\|PubMed:20563990}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G131500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857272	0.0	DQ857272.1 Glycine max Dof28 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001236794.1	1e-119	Dof21b
Refseq	XP_028236145.1	1e-119	dof zinc finger protein DOF2.5-like isoform X1
Swissprot	Q8LAP8	8e-42	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	K7KUU3	1e-151	K7KUU3_SOYBN; Uncharacterized protein
STRING	GLYMA06G13671.1	1e-152	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	4e-42	Dof family protein

Link Out ? help Back to Top
Phytozome	Glyma.06G131500.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]