PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G131500.2.p

Common Name

GLYMA_06G131500

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 190aa MW: 21148.2 Da PI: 10.017

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G131500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.9	6.1e-40	21	80	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s Glyma.06G131500.2.p 21 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRS 80 7899******************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-30	17	79	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-34	22	79	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.264	25	79	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	27	63	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MEGGSKPPPP PMLERRARPQ KDQALNCPRC NSTNTKFCYY NNYSLSQPRY FCKTCRRYWT 60 EGGSLRNVPV GGGSRKNKRS TPSAPPPSSA SAQAKKLPDL TTPNFPQSAS QDPKIHQGQD 120 LNLAYPPAED YNTVSMSKLI EVPYNTELTR VAFIKTLLPH QHQHLHLLTI SCLPWSFSRL 180 GLLLLPQGV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.28679	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269\|PubMed:20563990}.
Uniprot	TISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269\|PubMed:20563990}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G131500.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857272	0.0	DQ857272.1 Glycine max Dof28 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001236794.1	1e-105	Dof21b
Refseq	XP_028236145.1	1e-105	dof zinc finger protein DOF2.5-like isoform X1
Refseq	XP_028236146.1	1e-105	dof zinc finger protein DOF2.5-like isoform X2
Refseq	XP_028236147.1	1e-105	dof zinc finger protein DOF2.5-like isoform X2
Swissprot	Q8LAP8	1e-41	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	K7KUU3	1e-137	K7KUU3_SOYBN; Uncharacterized protein
STRING	GLYMA06G13671.1	1e-138	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	7e-42	Dof family protein

Link Out ? help Back to Top
Phytozome	Glyma.06G131500.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]