PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G133800.1.p
Common NameGLYMA_06G133800, LOC100793260
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 252aa    MW: 29036.3 Da    PI: 5.3514
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G133800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.2e-193890456
                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         +++f++eq++ Le  Fe+++++  +++ +LA+ lgL+ rqV +WFqNrRa++k
  Glyma.06G133800.1.p 38 KRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWK 90
                         568*************************************************9 PP
2HD-ZIP_I/II121.83.4e-3936128193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          e+krr+s+eq+++LE  Fe+e+kLep++K++lar+Lglqprqva+WFqnrRAR+k+k++E++y++Lk++yd+l+++ e+L+ke+++L+ e
  Glyma.06G133800.1.p  36 ENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASRFESLKKEKDSLQLE 125
                          58**************************************************************************************99 PP

          HD-ZIP_I/II  91 lke 93 
                          l++
  Glyma.06G133800.1.p 126 LQK 128
                          986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-191292IPR009057Homeodomain-like
SuperFamilySSF466892.61E-182592IPR009057Homeodomain-like
PROSITE profilePS5007117.543292IPR001356Homeobox domain
SMARTSM003893.3E-163596IPR001356Homeobox domain
PfamPF000464.2E-173890IPR001356Homeobox domain
CDDcd000866.47E-143893No hitNo description
PRINTSPR000319.0E-66372IPR000047Helix-turn-helix motif
PROSITE patternPS0002706790IPR017970Homeobox, conserved site
PRINTSPR000319.0E-67288IPR000047Helix-turn-helix motif
PfamPF021831.7E-1192132IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MCMMEGDENI QASTKGKNVE SFTSLEAPRK KSKKIENKRR FSDEQIRSLE CIFESESKLE  60
PRKKMQLARD LGLQPRQVAI WFQNRRARWK SKRIEQEYRK LKDEYDNLAS RFESLKKEKD  120
SLQLELQKLS DLVVTSQDGG REDKDGKENS IEDGGSGSGY SSWKPEAKKP RFSNDEGLEE  180
RIGVYSDDQN ENSIIRGVEK SEDKGHQLLR MDDHDHADMP LASLEKWYSG VDPSGILDQS  240
CSSSQWLDFW T*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.560200.0cotyledon| meristem| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G133800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0935440.0BT093544.1 Soybean clone JCVI-FLGm-17O6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241177.10.0uncharacterized protein LOC100793260
RefseqXP_028236177.10.0homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A445K9480.0A0A445K948_GLYSO; Homeobox-leucine zipper protein ATHB-7
TrEMBLC6T7V90.0C6T7V9_SOYBN; Uncharacterized protein
STRINGGLYMA06G13890.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-50homeobox 7