PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G142100.2.p
Common NameGLYMA_06G142100, LOC100786198
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 330aa    MW: 36897.2 Da    PI: 5.6377
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G142100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.14.8e-30172232259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqKe+ gs+fprsYYrCt++   +C++kk+v+r +++p+++e+tY+g+H+++
  Glyma.06G142100.2.p 172 EDGFTWRKYGQKEILGSKFPRSYYRCTHQklyECQAKKQVQRLDQNPNIFEVTYRGDHTCH 232
                          7****************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-28166233IPR003657WRKY domain
SuperFamilySSF1182909.68E-26168233IPR003657WRKY domain
SMARTSM007741.2E-38171233IPR003657WRKY domain
PfamPF031065.3E-27172232IPR003657WRKY domain
PROSITE profilePS5081120.208172234IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MMEEVINSIR RACVLAQNLE QDLPNLANQP AMMSLSIDQI TEAFSGAKEK MLQFSRQNQT  60
SDESPPTLVH ETTQLQPQMD ATLMQEWLRS SHALTMDQLF QMHQFHAARS TLQIGEMGGR  120
DGEDNFERNK GPEEMQGINE SSSRPRRREA NQEKRKVMVP APQFGNTEMP PEDGFTWRKY  180
GQKEILGSKF PRSYYRCTHQ KLYECQAKKQ VQRLDQNPNI FEVTYRGDHT CHMSSTALSS  240
VPLQQLLVDI TQNNSNTISS QLSPTMNLSL HPGGGSGTAA SSGGASASRF GGDYPVVDMA  300
DAMFNSRSSS NNSMEFLFSP EDKSDPKIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-18172231968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G142100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-42AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581709.10.0WRKY transcription factor 55 isoform X3
RefseqXP_028236291.10.0WRKY transcription factor 55-like isoform X3
TrEMBLK7KV110.0K7KV11_SOYBN; Uncharacterized protein
STRINGGLYMA06G14731.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-55WRKY DNA-binding protein 55