PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G143600.1.p

Common Name

LOC102663307

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB_related

Protein Properties

Length: 221aa MW: 24759 Da PI: 10.1671

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G143600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.1	8.6e-13	62	104	1	43
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 + +WT E+el++ + ++G+g+W++Iar++ +++t+ q++s+ Glyma.06G143600.1.p 62 KEPWTHREHELFLMGLIKYGKGHWSKIARHFLLNKTPQQVQSY 104 679*************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.833	60	113	IPR017884	SANT domain
SMART	SM00717	9.6E-9	61	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.5E-11	62	103	IPR009057	Homeodomain-like
Pfam	PF00249	2.4E-9	62	104	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.15E-10	64	112	IPR009057	Homeodomain-like
CDD	cd00167	6.54E-10	64	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MACTNPNQPQ TSLWRAASRH TNEHSQIATT FQPSMQLQRV ATVLEPVPES ITCMFPHGAR 60 LKEPWTHREH ELFLMGLIKY GKGHWSKIAR HFLLNKTPQQ VQSYGASFFR NLPSTHLHGF 120 RRRKPSYSTS SLMSKNNNLM AASASTTSYF MPMIVNEPQQ THMFFPENAP LNFLLAPSHG 180 EASSSNNNTT MYGFQMQTSG ARTSMNASAN GEVDLELRLG *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G143600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006581720.1	1e-164	transcription factor MYB1R1
Refseq	XP_028234254.1	1e-164	transcription factor MYB1R1-like
TrEMBL	A0A0B2QW66	1e-163	A0A0B2QW66_GLYSO; Transcription factor MYB1R1
TrEMBL	A0A0R0JGX7	1e-163	A0A0R0JGX7_SOYBN; Uncharacterized protein
TrEMBL	A0A445K9L4	1e-163	A0A445K9L4_GLYSO; Transcription factor MYBS1
STRING	GLYMA06G14875.1	1e-163	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14942	6	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11280.2	1e-14	MYB family protein

Link Out ? help Back to Top
Phytozome	Glyma.06G143600.1.p
Entrez Gene	102663307