PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G147100.1.p
Common NameGLYMA_06G147100, LOC100127396
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 197aa    MW: 22272.3 Da    PI: 6.7383
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G147100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.66.3e-29111169159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +dDgy+WrKYG+K+vk+s++pr+YY+C+ +gC vkk+ver+++d ++v +tY g Hnh+
  Glyma.06G147100.1.p 111 MDDGYKWRKYGKKTVKSSPNPRNYYKCSGEGCDVKKRVERDRDDSNYVLTTYDGVHNHQ 169
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-3098171IPR003657WRKY domain
SuperFamilySSF1182907.32E-27103171IPR003657WRKY domain
PROSITE profilePS5081130.469106171IPR003657WRKY domain
SMARTSM007745.5E-31111170IPR003657WRKY domain
PfamPF031061.3E-22112169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MDYYFGNLNP NPYYHHSAVV NMASPSSEFM LSDYLVLEDA LVVDHHQESW SQSTETESSE  60
KATSSDASHG FGDATSNTNM HIKCQNSGIK GKNAEVSQRI TFRTRSQLEV MDDGYKWRKY  120
GKKTVKSSPN PRNYYKCSGE GCDVKKRVER DRDDSNYVLT TYDGVHNHQT PSTAYYSQMP  180
LLHSNHDWAL HPSANS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-2399171274WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.351930.0cotyledon| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G147100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195900.0EU019590.1 Glycine max WRKY61 (WRKY61) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001348333.11e-147WRKY transcription factor 51
RefseqXP_028236361.11e-147probable WRKY transcription factor 51
TrEMBLA0A445K9S41e-146A0A445K9S4_GLYSO; Putative WRKY transcription factor 51 isoform A
TrEMBLI1KBC51e-146I1KBC5_SOYBN; Uncharacterized protein
STRINGGLYMA06G15220.11e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.19e-35WRKY DNA-binding protein 51