PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G147500.3.p
Common NameGLYMA_06G147500, LOC100799241
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 217aa    MW: 24485.1 Da    PI: 10.2906
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G147500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY38.42.4e-12159182124
                          ---SS-EEEEEEE--TT-SS-EEE CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsY 24 
                          ldDgy+WrKYGqK+vk++++pr+Y
  Glyma.06G147500.3.p 159 LDDGYKWRKYGQKVVKNTQHPRNY 182
                          59*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-14144182IPR003657WRKY domain
SuperFamilySSF1182906.02E-11151182IPR003657WRKY domain
PROSITE profilePS5081113.907154216IPR003657WRKY domain
SMARTSM007740.0021159211IPR003657WRKY domain
PfamPF031068.8E-8160182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MMSTTNVNHS LFEEQDQIPT QMGLFNIIPF PPNQTYPPLG CQTVTLKSIS AIAPSLSSAA  60
NFSETLLSTA VNQRPREEDL TSSLVGGGGG QLLSLSRSRV NSWAWEEVSD CLMGKRIGGD  120
DNHHHHLGVS AMKMKKMKAR RKVREPRFCF KTMSDVDVLD DGYKWRKYGQ KVVKNTQHPR  180
NYILLFRWKD WPGRPKRLGW RQVNEATTVA PKITVE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.34740.0meristem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G147500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195812e-99EU019581.1 Glycine max WRKY45 (WRKY45) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581742.11e-163probable WRKY transcription factor 13 isoform X2
SwissprotQ9SVB73e-29WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLK7KV421e-162K7KV42_SOYBN; Uncharacterized protein
STRINGGLYMA06G15260.11e-134(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.15e-21WRKY DNA-binding protein 13