PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G148400.1.p
Common NameGLYMA_06G148400, LOC100796247
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 323aa    MW: 35010.6 Da    PI: 9.1464
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G148400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.4e-21136185255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp+e    +r++lg+f+tae Aa+a+++a+++++g
  Glyma.06G148400.1.p 136 KYRGVRQRP-WGKWAAEIRDPVE---AARVWLGTFDTAEAAARAYDEAALRFRG 185
                          8********.**********855...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.5E-33135194IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22136194IPR016177DNA-binding domain
PROSITE profilePS5103225.488136193IPR001471AP2/ERF domain
SMARTSM003802.4E-36136199IPR001471AP2/ERF domain
CDDcd000184.34E-22136195No hitNo description
PfamPF008473.5E-14136185IPR001471AP2/ERF domain
PRINTSPR003677.3E-12137148IPR001471AP2/ERF domain
PRINTSPR003677.3E-12159175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MNNPTLSRLF PGLNREREMS AMVSALTHVV SGEVPITGDS SSSSSLVLHH QPHDDTVIVT  60
PTMPSSSSSS TYVVGTSSLK RSRENDTYTS SLFSHPPSSS PAMPTRAEYA TREMGNSVYE  120
YRTTTENATR DEGRRKYRGV RQRPWGKWAA EIRDPVEAAR VWLGTFDTAE AAARAYDEAA  180
LRFRGNKAKL NFPENVTLRQ PQFTVSNSPS SLVSITTSTD PVVHSTRPLL LPSQASTATN  240
VYEYFQLSGF PTNTNLYDGN RMFVTSNAMA SHHLQSSSSL LSSSSSAFVS SVTSQDTSLS  300
SLYSGQLPPW SKVSGHSSSS SG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23135196163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G148400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528031.10.0ethylene-responsive transcription factor ERF110
TrEMBLK7KV470.0K7KV47_SOYBN; Uncharacterized protein
STRINGGLYMA06G15341.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.14e-22ethylene response factor 110