PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G166500.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 249aa    MW: 28074.2 Da    PI: 8.6791
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G166500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.81.6e-47141401128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrF+Ptdeelv +yLk k+ + +l++ ++i+e+++ k +PwdLp ++  +e+e yfFs+++ ky++g+r nr+t+sgyWkatg+dk
  Glyma.06G166500.1.p  14 LPPGFRFQPTDEELVFQYLKCKIFSCQLPA-SIIPEINVSKNDPWDLPGNC--DEQERYFFSSKEAKYRNGNRMNRTTNSGYWKATGSDK 100
                          79****************************.89***************544..7899********************************* PP

                  NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++ s+  +    gl+ktLvfy+g++p+g++tdWvmheyrl
  Glyma.06G166500.1.p 101 KISSSisNIGFAGLRKTLVFYEGKSPNGSRTDWVMHEYRL 140
                          ***985445559**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-5411169IPR003441NAC domain
PROSITE profilePS5100553.69714169IPR003441NAC domain
PfamPF023651.7E-2515140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MERLNFIKNG VSRLPPGFRF QPTDEELVFQ YLKCKIFSCQ LPASIIPEIN VSKNDPWDLP  60
GNCDEQERYF FSSKEAKYRN GNRMNRTTNS GYWKATGSDK KISSSISNIG FAGLRKTLVF  120
YEGKSPNGSR TDWVMHEYRL VSLETIPSNS SQNYANEIGD WILCRIFMKK RSIESDNNNT  180
APRKNNAVTN YAQVAQPRFF DFLSVHNSAP PVPIQYSSTS SSCSSSNNVV EASSPNNHEE  240
TSSGYAHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-471417417170NO APICAL MERISTEM PROTEIN
1ut4_B1e-471417417170NO APICAL MERISTEM PROTEIN
1ut7_A1e-471417417170NO APICAL MERISTEM PROTEIN
1ut7_B1e-471417417170NO APICAL MERISTEM PROTEIN
3swm_A1e-471417420173NAC domain-containing protein 19
3swm_B1e-471417420173NAC domain-containing protein 19
3swm_C1e-471417420173NAC domain-containing protein 19
3swm_D1e-471417420173NAC domain-containing protein 19
3swp_A1e-471417420173NAC domain-containing protein 19
3swp_B1e-471417420173NAC domain-containing protein 19
3swp_C1e-471417420173NAC domain-containing protein 19
3swp_D1e-471417420173NAC domain-containing protein 19
4dul_A1e-471417417170NAC domain-containing protein 19
4dul_B1e-471417417170NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G166500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0926820.0BT092682.1 Soybean clone JCVI-FLGm-16A18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528094.10.0NAC domain-containing protein 83
RefseqXP_028236759.10.0NAC domain-containing protein 83-like
SwissprotQ9FY933e-71NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0B2QVX50.0A0A0B2QVX5_GLYSO; NAC domain-containing protein 29
TrEMBLA0A0R0JI220.0A0A0R0JI22_SOYBN; Uncharacterized protein
STRINGGLYMA06G17480.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-69NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]