PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G192300.1.p

Common Name

GLYMA_06G192300, LOC100810266

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 92aa MW: 10552 Da PI: 4.8487

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G192300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.7	2.7e-05	16	58	15	55
HHHHHHHHHHCTSCCC...TTS-..STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskK..lsKaeiLekAveYIksLq 55 +iN+ + +L+ llP++ ++++ + s + i ++++ +I+ Lq Glyma.06G192300.1.p 16 EINDLMLRLQALLPQLNQTRNSRasESLMKIMKETCSHINRLQ 58 7**************8555555523445679999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.2E-6	15	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-6	16	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MSGQRNFRTS KFTESEINDL MLRLQALLPQ LNQTRNSRAS ESLMKIMKET CSHINRLQNE 60 VKDLGERLAE LIDSVDLSDI DEECLTRLLQ Q*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G192300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003528189.1	2e-59	transcription factor ILI4
Refseq	XP_028234212.1	2e-59	transcription factor ILI4-like
TrEMBL	A0A0B2RBT5	5e-58	A0A0B2RBT5_GLYSO; Transcription factor bHLH135
TrEMBL	A0A445KBY3	6e-58	A0A445KBY3_GLYSO; Transcription factor PRE4 (Fragment)
TrEMBL	I1KCR4	5e-58	I1KCR4_SOYBN; Uncharacterized protein
STRING	GLYMA06G20520.1	8e-59	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10624	24	39
Representative plant	OGRP13203	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28857.1	3e-07	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.06G192300.1.p
Entrez Gene	100810266