PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G206300.1.p
Common NameGLYMA_06G206300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 111aa    MW: 12513.1 Da    PI: 6.2524
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G206300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.7e-072302355
                         HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH 23 LrellPkaskapskKlsKaeiLekAveYIksLq 55
                         Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  Glyma.06G206300.1.p  2 LRELIPHS----DQKRDKASFLLEVIEYIHFLQ 30
                         9******9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.972129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-5230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-13250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-6234No hitNo description
SuperFamilySSF474592.09E-9251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MLRELIPHSD QKRDKASFLL EVIEYIHFLQ EKVHKYEGSF QGWRNEQEKL MPWKKNNDKP  60
AESFQPCGTD NGSSSSSALL FASMVDEKNI TISRTIPPST QNVESGLGTI *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.593011e-123flower| hypocotyl| root| seed coat| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G206300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-44AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020227618.17e-60transcription factor BIM1 isoform X1
SwissprotQ9LEZ39e-22BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A0R0JPU66e-77A0A0R0JPU6_SOYBN; Uncharacterized protein
STRINGGLYMA06G22790.11e-77(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.12e-24bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]