PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G209000.3.p
Common NameDr1, GLYMA_06G209000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 137aa    MW: 15392.4 Da    PI: 4.3759
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G209000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB70.33.4e-222741486
                NF-YB 14 srimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86
                         ++i+k++lP + ++++da++++ ec +efi +v+se+++ c++e+r+ti+++ +l al+ lGf +y+e++ + 
  Glyma.06G209000.3.p  2 TKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEERRTIAPEHVLKALGVLGFGEYIEEVYAA 74
                         68******************************************************************98654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-342123IPR009072Histone-fold
SuperFamilySSF471131.01E-312124IPR009072Histone-fold
PfamPF008084.2E-19259IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE VCNKEERRTI APEHVLKALG  60
VLGFGEYIEE VYAAYEQHKL ETMQDSLKGA KWSNRAEMTE EEALAEQQRM FAEARARMNG  120
GAIQSKEPEA DQSLES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B6e-32111521133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G209000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4649060.0AF464906.1 Glycine max repressor protein (Dr1) mRNA, complete cds.
GenBankBT0898160.0BT089816.1 Soybean clone JCVI-FLGm-2L20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235678.19e-97class 2 transcription repressor NC2 beta 2 isoform 1
RefseqXP_028237421.19e-97protein Dr1 homolog isoform X1
SwissprotP495921e-77NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A445KCL82e-95A0A445KCL8_GLYSO; Protein Dr1-like
TrEMBLQ8W0W52e-95Q8W0W5_SOYBN; Repressor protein
STRINGGLYMA06G23234.15e-95(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.26e-80nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Song W,Solimeo H,Rupert RA,Yadav NS,Zhu Q
    Functional dissection of a Rice Dr1/DrAp1 transcriptional repression complex.
    Plant Cell, 2002. 14(1): p. 181-95
    [PMID:11826307]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]