PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G209000.4.p

Common Name

GLYMA_06G209000

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YB

Protein Properties

Length: 134aa MW: 14803.8 Da PI: 4.4929

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G209000.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	64.2	2.8e-20	11	81	3	73
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalat 73 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se+++ c++e+r+ti+++ +l al++ Glyma.06G209000.4.p 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEERRTIAPEHVLKALGQ 81 6899***************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.6E-27	8	80	IPR009072	Histone-fold
SuperFamily	SSF47113	6.45E-29	12	121	IPR009072	Histone-fold
Pfam	PF00808	1.3E-22	14	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MEPMDIVGKA KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE 60 VCNKEERRTI APEHVLKALG QDSLKGAKWS NRAEMTEEEA LAEQQRMFAE ARARMNGGAI 120 QSKEPEADQS LES*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	9e-27	12	112	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.4205	1e-124	cotyledon\| flower\| hypocotyl\| leaf\| meristem\| pod\| root\| seed coat\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G209000.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT092715	0.0	BT092715.1 Soybean clone JCVI-FLGm-11H15 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001350891.1	4e-93	class 2 transcription repressor NC2 beta 2 isoform 2
Refseq	XP_028237422.1	4e-93	protein Dr1 homolog isoform X2
Swissprot	P49592	3e-68	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	C6T5K3	8e-92	C6T5K3_SOYBN; Uncharacterized protein
STRING	XP_007138352.1	1e-84	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.2	1e-70	nuclear factor Y, subunit B13

Link Out ? help Back to Top
Phytozome	Glyma.06G209000.4.p
Entrez Gene	547635

Publications ? help Back to Top
Song W,Solimeo H,Rupert RA,Yadav NS,Zhu Q Functional dissection of a Rice Dr1/DrAp1 transcriptional repression complex. Plant Cell, 2002. 14(1): p. 181-95 [PMID:11826307] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]