PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G209000.5.p
Common NameGLYMA_06G209000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 153aa    MW: 17255.7 Da    PI: 5.237
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G209000.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB62.77.9e-201180372
                NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwala 72
                         ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se+++ c++e+r+ti+++ +l al+
  Glyma.06G209000.5.p 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEERRTIAPEHVLKALG 80
                         6899**************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.7E-27879IPR009072Histone-fold
SuperFamilySSF471132.51E-241280IPR009072Histone-fold
PfamPF008081.8E-221479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MEPMDIVGKA KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE  60
VCNKEERRTI APEHVLKALG VFLKLLNCCI AKVFMQIRSN LCLINYVISS LKCCFLFCIL  120
NFNFYLVSFY VSLLSICEVP VILEIFFFCV AL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B3e-2212791278Transcription Regulator NC2 beta chain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.42051e-125cotyledon| flower| hypocotyl| leaf| meristem| pod| root| seed coat| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G209000.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4649061e-132AF464906.1 Glycine max repressor protein (Dr1) mRNA, complete cds.
GenBankBT0898161e-132BT089816.1 Soybean clone JCVI-FLGm-2L20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028228844.15e-53protein Dr1 homolog
SwissprotP495921e-49NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A0R0JJZ01e-103A0A0R0JJZ0_SOYBN; Uncharacterized protein
STRINGXP_007138352.13e-52(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.21e-51nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]