PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G212900.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 236aa    MW: 26468.1 Da    PI: 8.2179
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G212900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.14.8e-2563122158
                          ---SS-EEEEEEE--.TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   1 ldDgynWrKYGqKev.kgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                          ++Dgy+W+KYGqK+v k+++ pr+Y+ C+ a +C+  kkv+rs +d+++++ tYeg+Hnh
  Glyma.06G212900.1.p  63 VKDGYQWKKYGQKKVtKDNPSPRAYFECSLApSCSNLKKVQRSIQDKSILVATYEGKHNH 122
                          58**********998689***********999**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-2357123IPR003657WRKY domain
PROSITE profilePS5081120.88558125IPR003657WRKY domain
SuperFamilySSF1182901.31E-1960124IPR003657WRKY domain
SMARTSM007745.0E-2263124IPR003657WRKY domain
PfamPF031068.4E-2064122IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
ETLSSKCEKL QSHFQEINNE EQKVGTKSDQ SGSVLLARPE FSMAQKPSQI FFKTHPKDNS  60
LMVKDGYQWK KYGQKKVTKD NPSPRAYFEC SLAPSCSNLK KVQRSIQDKS ILVATYEGKH  120
NHGVFHDLLK PSSSIPETSI MINNLPITNM PNDKDTLNID LALCNSDQTD IRLCDDVKQQ  180
NHRGSKSKIE EYVTPLVKDP DFIMPLAEAV AHSLKSQTYK QVGLNLNLGL PEPHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-16621221371WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G212900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528286.11e-175probable WRKY transcription factor 40
TrEMBLA0A0R0JK301e-174A0A0R0JK30_SOYBN; Uncharacterized protein (Fragment)
STRINGGLYMA06G23990.21e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Representative plantOGRP1149547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-37WRKY DNA-binding protein 40