PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G219800.1.p
Common NameGLYMA_06G219800, Glyma06g27440.3, LOC100800480
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 471aa    MW: 51005.8 Da    PI: 8.4017
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G219800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.82.2e-23163219259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +DgynWrKYGqK+vk+   +rsYYrCt++ C++kk ++ +++ ++v+ei+Y+++H h+
  Glyma.06G219800.1.p 163 SDGYNWRKYGQKQVKSPMGSRSYYRCTHSYCCAKK-IKFCDHSGHVIEIVYKSQHSHD 219
                          7********************************98.999999***************7 PP
2WRKY91.66e-29333389359
                          -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          Dgy+WrKYGqK vkg+++ r+YYrCt+agCpv+k++e++ ++ k+++itY+g H+h+
  Glyma.06G219800.1.p 333 DGYRWRKYGQKLVKGNPHFRNYYRCTTAGCPVRKHIETAVDNSKALIITYKGMHDHD 389
                          9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-20157221IPR003657WRKY domain
PROSITE profilePS5081117.178157221IPR003657WRKY domain
SuperFamilySSF1182902.88E-19160221IPR003657WRKY domain
SMARTSM007742.2E-21162220IPR003657WRKY domain
PfamPF031061.0E-16164219IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-30316391IPR003657WRKY domain
SuperFamilySSF1182907.06E-26325391IPR003657WRKY domain
PROSITE profilePS5081130.526326391IPR003657WRKY domain
SMARTSM007744.3E-32331390IPR003657WRKY domain
PfamPF031061.4E-22333388IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MKEDEETQQN QQQITDSSLS TESRTSTPSD GAPPNSETLV LRSSLLHDLA THMQGSSTAR  60
KGGKAESKVS AQPPDEETVV KDAVEAPKKQ TENRLQSFCS TSLSGVSPTS VSHSLSSALS  120
PTVPQQRPSP PKANSVQVPK VDKGTPSDGT TLSSVSVARA SASDGYNWRK YGQKQVKSPM  180
GSRSYYRCTH SYCCAKKIKF CDHSGHVIEI VYKSQHSHDP PHKIDTAKES KLLPSSEPKV  240
ESSVSKHSTN VLNDSDPSSS PKELLQETPC SGDKNLENSS NVENGKIILN DEHVNDPEPK  300
RRLNNSDLDT AVKPGKKTKF VVHATKDVGI SGDGYRWRKY GQKLVKGNPH FRNYYRCTTA  360
GCPVRKHIET AVDNSKALII TYKGMHDHDM PVPKKRHGPP SASLVAAAAP ASTNNVQLKK  420
TGLLQNQETE AQCLEDTEGE LTGEALDLGG EKAIESARTL LSIGFEIKPC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-25322391877Probable WRKY transcription factor 4
2ayd_A7e-25318391174WRKY transcription factor 1
2lex_A9e-25322391877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.625180.0hypocotyl
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G219800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312550.0KT031255.1 Glycine max clone HN_CCL_20 WRKY transcription factor (Glyma06g27440.3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304613.20.0probable WRKY transcription factor 32
RefseqXP_028223005.10.0probable WRKY transcription factor 32
SwissprotP595831e-118WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A445EYU80.0A0A445EYU8_GLYSO; Putative WRKY transcription factor 32
TrEMBLK7KWJ70.0K7KWJ7_SOYBN; WRKY transcription factor
STRINGGLYMA06G27440.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Representative plantOGRP10318610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-105WRKY DNA-binding protein 32
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]