PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G220000.1.p
Common NameGLYMA_06G220000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 307aa    MW: 35509.9 Da    PI: 10.343
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G220000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.24.3e-201094999
                         HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                          +l++g l+lp+kf+e++g  +  + tl l+ ++g +W+++l  +k++++++++kGW+eF+k + L+ g  ++F+++++s f   v++f+ 
  Glyma.06G220000.1.p 10 PSLQEGKLMLPNKFVEKYG--EGLPNTLFLKAPNGAEWKLTL--EKRDDKMWFQKGWREFAKHHSLDHGHLLLFRYQRTSHF--QVHIFDG 94
                         4456677***********8..45889****************..********************************998999..9999985 PP
2B370.91.6e-22190290199
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                          f+ v  ps++ ++g l +p kf+++h ++ k+++ ++ le ++gr+W  ++++    +++r+ l++GWk F+++n+Lk+gD+++F+l+  
  Glyma.06G220000.1.p 190 FLVVIYPSNARSRGPLNFPSKFCKKHiDLRKNRG-DINLEVLNGRVWHARYRIrtAETRRRFELSSGWKTFAEDNNLKVGDVCTFELIPA 278
                          6778899*******************98887776.9***************8876777888***************************88 PP

                          SEE..EEEEE-S CS
                   B3  88 sefelvvkvfrk 99 
                          ++ ++ v++fr 
  Glyma.06G220000.1.p 279 TKLTFQVHIFRV 290
                          99999****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-25295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-24295IPR015300DNA-binding pseudobarrel domain
CDDcd100172.23E-19293No hitNo description
PROSITE profilePS5086314.339295IPR003340B3 DNA binding domain
SMARTSM010193.4E-18395IPR003340B3 DNA binding domain
PfamPF023621.0E-161094IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.5E-25183291IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-24185290IPR015300DNA-binding pseudobarrel domain
CDDcd100173.47E-25188289No hitNo description
PfamPF023624.2E-21190290IPR003340B3 DNA binding domain
PROSITE profilePS5086315.213190291IPR003340B3 DNA binding domain
SMARTSM010194.1E-16190291IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MHFFRIIIAP SLQEGKLMLP NKFVEKYGEG LPNTLFLKAP NGAEWKLTLE KRDDKMWFQK  60
GWREFAKHHS LDHGHLLLFR YQRTSHFQVH IFDGSGLEIE YPLGKVEGKM TSNYQKNKRP  120
NGEKLEYEFL QPCMGSRKCV KVDNTMKPKL GCSACASYRQ KGQRKTKMTT TEHVTAFDRA  180
SYFRPCNPSF LVVIYPSNAR SRGPLNFPSK FCKKHIDLRK NRGDINLEVL NGRVWHARYR  240
IRTAETRRRF ELSSGWKTFA EDNNLKVGDV CTFELIPATK LTFQVHIFRV SANSNCSTSQ  300
GSIDIF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G220000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548489.11e-117B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_003551329.11e-117B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_028213212.11e-117B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A0R0JQR60.0A0A0R0JQR6_SOYBN; Uncharacterized protein
TrEMBLA0A445M1520.0A0A445M152_GLYSO; B3 domain-containing transcription factor VRN1
STRINGGLYMA01G11755.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-31B3 family protein