PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G221200.1.p
Common NameGLYMA_06G221200, LOC100790009
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 254aa    MW: 28459.9 Da    PI: 7.3274
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G221200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.5e-1374120354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r+h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+v+ +++L
  Glyma.06G221200.1.p  74 RNHKEAEKRRRERINSHLDKLRTLLPCN-----SKTDKASLLAKVVQRVREL 120
                          58*************************8.....7************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.73971120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1474131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-1174120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-1274125No hitNo description
Gene3DG3DSA:4.10.280.104.2E-1475129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-1277126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.0E-4167230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MMHRQIEMEN SELFQFLTNT NDAFFNTASY GLPAAPAAST MQHSFSGSFS YYPLEASHDH  60
HAPSHEDKAL AALRNHKEAE KRRRERINSH LDKLRTLLPC NSKTDKASLL AKVVQRVREL  120
KQQISSLSDS EAFPSETDEV SVLSTSGDND DHGGCDDNDG RLIFKASLCC EDRSDLIPEL  180
IEILRSLRLK TLKAEMATLG GRTRNVLVVA TDKDHSGESI QFLQNSLKSL VERSSNSNDR  240
SKRRRVLDRK FIA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241245KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G221200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520293.20.0transcription factor bHLH106
RefseqXP_028208327.10.0transcription factor bHLH106-like
SwissprotO806749e-73BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A445LQ150.0A0A445LQ15_GLYSO; Transcription factor bHLH106
TrEMBLK7K8S90.0K7K8S9_SOYBN; Uncharacterized protein
STRINGGLYMA02G23590.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.13e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]