PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G234700.1.p
Common NameGLYMA_06G234700, LOC100781030
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 201aa    MW: 22959.7 Da    PI: 7.2322
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G234700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.84.9e-202880456
                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         + ++t++q+ +Le++F +n+++  e++ +LA++lgL+ rqV +W+qN+Ra++k
  Glyma.06G234700.1.p 28 KKRLTEDQVAILEKCFSSNMKLEPEQKFHLANQLGLPPRQVAIWYQNKRARWK 80
                         5679************************************************9 PP
2HD-ZIP_I/II114.28.2e-3727118293
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          +k+rl+++qv++LE++F+++ kLepe+K +la++Lgl prqva+W+qn+RAR+kt+ lE+d+ +L+++++++++e+++Lek+ve+L++el
  Glyma.06G234700.1.p  27 NKKRLTEDQVAILEKCFSSNMKLEPEQKFHLANQLGLPPRQVAIWYQNKRARWKTQSLEVDHGVLQARLENVVAEKKQLEKDVERLKAEL 116
                          79***************************************************************************************9 PP

          HD-ZIP_I/II  92 ke 93 
                          k+
  Glyma.06G234700.1.p 117 KK 118
                          97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.55E-181483IPR009057Homeodomain-like
PROSITE profilePS5007116.182282IPR001356Homeobox domain
SMARTSM003891.0E-162486IPR001356Homeobox domain
CDDcd000866.39E-162883No hitNo description
PfamPF000462.5E-172880IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-192986IPR009057Homeodomain-like
PROSITE patternPS0002705780IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGDFIFSFKT QQQEHHAHHQ RAKHNNNKKR LTEDQVAILE KCFSSNMKLE PEQKFHLANQ  60
LGLPPRQVAI WYQNKRARWK TQSLEVDHGV LQARLENVVA EKKQLEKDVE RLKAELKKAQ  120
EMLLITNSVK GGDHNNNNAC EFSTSFEEGG SSGVVLDDAT YHHHHECWQS GGEVMQVEEL  180
YAYFVGANYG TGLHEKGHKI *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.263740.0hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G234700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354140.0AC235414.1 Glycine max strain Williams 82 clone GM_WBb0131H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527218.11e-149homeobox-leucine zipper protein ATHB-52
RefseqXP_028237640.11e-149homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A0B2SAY11e-148A0A0B2SAY1_GLYSO; Homeobox-leucine zipper protein ATHB-52
TrEMBLI1KDP71e-148I1KDP7_SOYBN; Uncharacterized protein
STRINGGLYMA06G35050.11e-148(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110112239
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.11e-35homeobox protein 52