PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G242200.1.p
Common NameGLYMA_06G242200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 213aa    MW: 23295 Da    PI: 8.1245
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G242200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.99.9e-3451109159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Glyma.06G242200.1.p  51 LDDGYCWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 109
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-3544111IPR003657WRKY domain
SuperFamilySSF1182903.79E-2944111IPR003657WRKY domain
PROSITE profilePS5081138.18246111IPR003657WRKY domain
SMARTSM007741.5E-3851110IPR003657WRKY domain
PfamPF031067.4E-2652109IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MINIVSRNEC RDDDAKNWIN SAYNLNISLV YIYAALEVAR FGCTLSEVDI LDDGYCWRKY  60
GQKVVRGNPN PRSYYKCTNA GCPVRKHVER ASHDPKAVIT TYEGKHNHDV PAARNSSHDM  120
AVPAVAAGGQ TRTKLEESDT ISLDLGMGIT SAAEHSSSNL KFVHTTSTPV YFGVLNNSSN  180
SYGSRDNRSD GPSLNRSSYP CPQSMGRILM GP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-37441121078Probable WRKY transcription factor 4
2lex_A3e-37441121078Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.66830.0hypocotyl| leaf| meristem| root| seed coat| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO324931070.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G242200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3231280.0AY323128.1 Glycine max putative WRKY-type DNA binding protein (WRKY1) mRNA, complete cds.
GenBankEU0195550.0EU019555.1 Glycine max WRKY7 (WRKY7) mRNA, complete cds.
GenBankEU3753500.0EU375350.1 Glycine max transcription factor (WRKY3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595624.11e-109WRKY transcription factor 7 isoform X1
RefseqXP_014622007.11e-110WRKY transcription factor 7 isoform X2
RefseqXP_028200587.11e-109probable WRKY transcription factor 20 isoform X1
RefseqXP_028200589.11e-110probable WRKY transcription factor 20 isoform X3
SwissprotQ93WV01e-59WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0R0JL931e-157A0A0R0JL93_SOYBN; Uncharacterized protein
STRINGGLYMA06G37100.11e-118(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-62WRKY family protein