PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G251200.1.p
Common NameGLYMA_06G251200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 70aa    MW: 8118.4 Da    PI: 10.7057
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G251200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.67.1e-062953529
                         HHHHHHHHHHHHHHHHHHHHCTSCC CS
                  HLH  5 hnerErrRRdriNsafeeLrellPk 29
                         h+++Er  R+ri +++  L+el+P+
  Glyma.06G251200.1.p 29 HSIAERLHRERIAERIRALQELVPS 53
                         99**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.06E-62256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-62456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.0772469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MPTTVPTAPH PPAVRPRVRA RRGQTTDPHS IAERLHRERI AERIRALQEL VPSVNKVFEF  60
LDMTFYYYM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.87912e-86pod| root| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G251200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016207334.12e-27transcription factor UNE12
RefseqXP_021898025.15e-27transcription factor UNE12 isoform X2
SwissprotQ9ZUG95e-18BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A445KE132e-42A0A445KE13_GLYSO; Transcription factor bHLH66
TrEMBLK7KX932e-42K7KX93_SOYBN; Uncharacterized protein
STRINGGLYMA06G38935.14e-43(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.15e-15LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]