PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G260000.2.p
Common NameGLYMA_06G260000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 378aa    MW: 41600 Da    PI: 9.419
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G260000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH185.1e-062683061154
                          HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Glyma.06G260000.2.p 268 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 306
                          5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.576257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-11267324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.52E-7267310No hitNo description
SMARTSM003530.0049268312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-9271314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MVVSTSKILI RGEKGSESSF RSMLQENLSS SNTNFQPQES GSNIGLSQHH HHHHHHQQLH  60
WRPEKLFSAE SSSNEFKRGF SLDQTQFSPQ YSSGDSTVTS QGLPCSFQMD YVGNPSSILQ  120
GLLGQESNNN NNQQQQQPYQ GGGGGAMNFA YSAAASYGLN SNVELVRSWS KVPQFLRASP  180
PKQQPNNQLH FTNNAPFWNA NSEPAIKDSR SSFIPSLHPP FSTSNFDVQS KNISEVRDSG  240
GVVKKSGSEA APKRPRNETP SPLPAFKVRK EKMGDRITAL QQLVSPFGKT DTASVLSEAI  300
EYIKFLHEQV TVLSTPYMKS GAPIQHQQSS GKSKESEGPK QDLRSRGLCL VPVSSTFPVT  360
HEPTVEYWTP TFGGTYR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G260000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150396e-88AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526151.10.0transcription factor bHLH123
SwissprotQ8GXT36e-81BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A0R0JS250.0A0A0R0JS25_SOYBN; Uncharacterized protein
STRINGGLYMA06G40760.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.16e-75bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]