PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G284500.2.p

Common Name

GLYMA_06G284500

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

TCP

Protein Properties

Length: 283aa MW: 31887.5 Da PI: 6.3388

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G284500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.5	7.1e-36	20	144	2	110
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec..... 73 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak++i++l+++ ++++a ++ Glyma.06G284500.2.p 20 TGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKTSIDKLAELppwhpptnheeeeQNDAAGSSgviai 109 79**************************************************************88777666665553333322233322 PP TCP 74 eaesssssasnsssgkaaksaakskksqksaasalnl 110 e ++++++++++++++++++++++++q+s+++ n+ Glyma.06G284500.2.p 110 E--QQQQQQQQQQQQQQQQQQQQQHQQQQSESCGYNF 144 1..2222222222223333333455555555555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-34	20	137	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.98	22	80	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MRTNVGDIVQ VEGGHIVRST GRKDRHSKVY TSKGPRDRRV RLSAHTAIEF YDVQDRLGYD 60 RPSKAVDWLI KKAKTSIDKL AELPPWHPPT NHEEEEQNDA AGSSGVIAIE QQQQQQQQQQ 120 QQQQQQQQQQ QHQQQQSESC GYNFQLQRQL GAFISTHVDT DHINFQTNNN NSSEDLGLSL 180 HCFQDHPGLI QWQSQQEGAN QTPPSNEHQI QQTPFAGSTP VGFENHYQRS VTWNNEATTT 240 DHVNRFVSDG LAGFCIPDRI QGVEENHGVA SNRPSSSPSS IH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-21	27	80	1	54	Putative transcription factor PCF6
5zkt_B	2e-21	27	80	1	54	Putative transcription factor PCF6
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.61714	0.0	flower\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G284500.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	1e-119	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006582290.1	1e-176	transcription factor TCP4
Refseq	XP_006582291.1	1e-176	transcription factor TCP4
Refseq	XP_028238046.1	1e-176	transcription factor TCP4-like
TrEMBL	A0A0R0JM41	0.0	A0A0R0JM41_SOYBN; Uncharacterized protein
STRING	GLYMA06G43721.1	1e-176	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	2e-48	TCP family protein

Link Out ? help Back to Top
Phytozome	Glyma.06G284500.2.p