PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G284500.4.p
Common NameGLYMA_06G284500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 283aa    MW: 31887.5 Da    PI: 6.3388
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G284500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.57.1e-36201442110
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec..... 73 
                          +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak++i++l+++             ++++a ++     
  Glyma.06G284500.4.p  20 TGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKTSIDKLAELppwhpptnheeeeQNDAAGSSgviai 109
                          79**************************************************************88777666665553333322233322 PP

                  TCP  74 eaesssssasnsssgkaaksaakskksqksaasalnl 110
                          e  ++++++++++++++++++++++++q+s+++  n+
  Glyma.06G284500.4.p 110 E--QQQQQQQQQQQQQQQQQQQQQHQQQQSESCGYNF 144
                          1..2222222222223333333455555555555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-3420137IPR005333Transcription factor, TCP
PROSITE profilePS5136931.982280IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MRTNVGDIVQ VEGGHIVRST GRKDRHSKVY TSKGPRDRRV RLSAHTAIEF YDVQDRLGYD  60
RPSKAVDWLI KKAKTSIDKL AELPPWHPPT NHEEEEQNDA AGSSGVIAIE QQQQQQQQQQ  120
QQQQQQQQQQ QHQQQQSESC GYNFQLQRQL GAFISTHVDT DHINFQTNNN NSSEDLGLSL  180
HCFQDHPGLI QWQSQQEGAN QTPPSNEHQI QQTPFAGSTP VGFENHYQRS VTWNNEATTT  240
DHVNRFVSDG LAGFCIPDRI QGVEENHGVA SNRPSSSPSS IH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-212780154Putative transcription factor PCF6
5zkt_B2e-212780154Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.617140.0flower| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G284500.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-119AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006582290.11e-176transcription factor TCP4
RefseqXP_006582291.11e-176transcription factor TCP4
RefseqXP_028238046.11e-176transcription factor TCP4-like
TrEMBLA0A0R0JM410.0A0A0R0JM41_SOYBN; Uncharacterized protein
STRINGGLYMA06G43721.11e-176(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-48TCP family protein