PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G285100.1.p
Common NameGLYMA_06G285100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 197aa    MW: 22528.6 Da    PI: 9.1762
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G285100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.91.2e-36111101100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          aCaaCk++r+kC+++C+l pyfp++++++f +vhk+FG+sn++kl+k++++e+r+++++sl++eA++r+rdP++G +g ++k+ ++++++
  Glyma.06G285100.1.p  11 ACAACKHQRKKCSENCILGPYFPSNKNQEFHAVHKVFGVSNITKLVKNAKTEDRRKVVDSLIWEACCRQRDPIQGPYGEYTKVYNEYKKV 100
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                            el++ k++
  Glyma.06G285100.1.p 101 LDELKRFKSQ 110
                          *999987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.63110111IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-3511107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MQRNNSGMHP ACAACKHQRK KCSENCILGP YFPSNKNQEF HAVHKVFGVS NITKLVKNAK  60
TEDRRKVVDS LIWEACCRQR DPIQGPYGEY TKVYNEYKKV LDELKRFKSQ NQLLQIPSLG  120
LKSVQGLITC SETKGEHKAT IDSALDYLHG KKNGIIDSDN YNTYCSNYLQ EFQNMRPEVV  180
IPFRQHSQSY YTTGIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-2041044104LOB family transfactor Ramosa2.1
5ly0_B3e-2041044104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G285100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025984579.11e-146protein ASYMMETRIC LEAVES 2
SwissprotQ9LNB91e-36LBD2_ARATH; LOB domain-containing protein 2
TrEMBLA0A0B2PJN51e-146A0A0B2PJN5_GLYSO; LOB domain-containing protein 2
TrEMBLK7KXY21e-146K7KXY2_SOYBN; Uncharacterized protein
STRINGGLYMA06G43811.11e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127222534
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.16e-39LOB domain-containing protein 2