PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G285800.2.p

Common Name

GLYMA_06G285800, LOC100792210

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

VOZ

Protein Properties

Length: 392aa MW: 44266.4 Da PI: 5.4458

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G285800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	434.7	1.2e-133	148	364	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspw 90 pppsafl+pkcalwdc+rpaqg+ew+q+ycss+h+ la neglpg+tp+lrp+gi++kdg+lfaa+ ak+qgkevgip+cegaa++kspw Glyma.06G285800.2.p 148 PPPSAFLAPKCALWDCFRPAQGVEWCQNYCSSCHELLANNEGLPGMTPILRPWGIGVKDGPLFAAVLAKTQGKEVGIPSCEGAASTKSPW 237 89************************************************************************************** PP VOZ 91 naaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldal 180 na+e+fdls+leget+rewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmke+gg+krsyymdpqp+s++ewhlyeyein++d + Glyma.06G285800.2.p 238 NAPEFFDLSFLEGETVREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKEHGGQKRSYYMDPQPLSYLEWHLYEYEINNQDGC 327 ************************************************************************************** PP VOZ 181 alyrlelklvdekksakgkvskdsladlqkklgrlta 217 alyrlelklvd+kks+kgkv+k+sl+dlq+k+g+lta Glyma.06G285800.2.p 328 ALYRLELKLVDKKKSPKGKVTKESLTDLQNKMGQLTA 364 *********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MLLGTEEKDD ATSPLTKPVP LKNEILTNNI SDINFQYFQE KHFNDNQPLG HTFEGSASTL 60 YNNAYNSSYM TQLDYHPFTL NQDMGHNSNL LGQFDLYHDL RHNTEMKNNS ESTQFSLEGF 120 DCSQFFEADD NVQHGENIIP NILPNICPPP SAFLAPKCAL WDCFRPAQGV EWCQNYCSSC 180 HELLANNEGL PGMTPILRPW GIGVKDGPLF AAVLAKTQGK EVGIPSCEGA ASTKSPWNAP 240 EFFDLSFLEG ETVREWLFFD KPRRAFESGN RKQRSLPDYS GRGWHESRKQ VMKEHGGQKR 300 SYYMDPQPLS YLEWHLYEYE INNQDGCALY RLELKLVDKK KSPKGKVTKE SLTDLQNKMG 360 QLTAAVPSTD DGQPVKGKTK AKSENDESPN K*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MLLGTEEKDD ATSPLTKPVP LKNEILTNNI SDINFQYFQE KHFNDNQPLG HTFEGSASTL  60
YNNAYNSSYM TQLDYHPFTL NQDMGHNSNL LGQFDLYHDL RHNTEMKNNS ESTQFSLEGF  120
DCSQFFEADD NVQHGENIIP NILPNICPPP SAFLAPKCAL WDCFRPAQGV EWCQNYCSSC  180
HELLANNEGL PGMTPILRPW GIGVKDGPLF AAVLAKTQGK EVGIPSCEGA ASTKSPWNAP  240
EFFDLSFLEG ETVREWLFFD KPRRAFESGN RKQRSLPDYS GRGWHESRKQ VMKEHGGQKR  300
SYYMDPQPLS YLEWHLYEYE INNQDGCALY RLELKLVDKK KSPKGKVTKE SLTDLQNKMG  360
QLTAAVPSTD DGQPVKGKTK AKSENDESPN K*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.30563	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G285800.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003527403.1	0.0	transcription factor VOZ1
Refseq	XP_006582297.1	0.0	transcription factor VOZ1
Swissprot	Q9SGQ0	1e-125	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	K7KXY5	0.0	K7KXY5_SOYBN; Uncharacterized protein
STRING	GLYMA06G43890.3	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-119	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	Glyma.06G285800.2.p
Entrez Gene	100792210

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]